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BML_coassembly_scaffold_108_prodigal-single.1__X__X__00223
Bact-VirBML_coassembly_scaffold_108_prodigal-single.1__X__X__00223
Identity
- Kingdom:
- phage
Quality
68.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 58-111
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.77 | 67.0 | 6.05e-01 | 100.0% | 90.7% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.73 | 63.0 | 5.63e-01 | 100.0% | 93.8% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.72 | 61.0 | 5.40e-01 | 100.0% | 65.4% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.70 | 60.0 | 5.70e-01 | 100.0% | 93.9% |
| 1izmA00 | 1.20.120.740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 | 0.68 | 56.0 | 4.01e-01 | 96.3% | 51.2% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 57.0 | 5.67e-01 | 100.0% | 94.5% |
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 53.0 | 5.43e-01 | 98.1% | 96.2% |
| 3dfzA02 | 1.10.8.610 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like | 0.65 | 55.0 | 5.05e-01 | 100.0% | 74.3% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.64 | 53.0 | 5.29e-01 | 100.0% | 100.0% |
| 6vq6G02 | 1.20.1460.10 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 | 0.64 | 57.0 | 3.90e-01 | 100.0% | 45.7% |
| 4m0mA03 | 1.20.1270.430 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 51.0 | 4.65e-01 | 96.3% | 82.3% |
| 1lj2A00 | 1.20.5.970 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein | 0.61 | 51.0 | 4.23e-01 | 100.0% | 58.5% |
| 1eo0A00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.57 | 44.0 | 4.06e-01 | 92.6% | 71.4% |
| 7wgrA02 | 3.40.50.12470 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 46.0 | 3.06e-01 | 98.1% | 34.1% |
| 3nivC02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.57 | 38.0 | 2.90e-01 | 70.4% | 31.5% |
| 3nuqA01 | 1.10.150.450 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 47.0 | 3.91e-01 | 100.0% | 55.6% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 46.0 | 3.41e-01 | 100.0% | 77.6% |
| 3itfA00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 41.0 | 3.37e-01 | 92.6% | 76.6% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3228914 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.77 | 66.0 | 4.83e-01 | 100.0% | 43.9% |
| 4439850 | 632.2.1.36 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › AATF-Che1 | 0.72 | 64.0 | 4.22e-01 | 100.0% | 25.4% |
| 3341256 | 109.3.1.137 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF3490 | 0.70 | 57.0 | 5.61e-01 | 96.3% | 91.7% |
| 4617970 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.66 | 53.0 | 3.92e-01 | 98.1% | 38.2% |
| 3515291 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.64 | 37.0 | 3.44e-01 | 96.3% | 45.7% |
| 1503071 | 632.2.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA | 0.63 | 52.0 | 5.18e-01 | 100.0% | 98.2% |
| 3440579 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 53.0 | 4.70e-01 | 98.1% | 66.3% |
| 4085235 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.63 | 51.0 | 3.82e-01 | 98.1% | 39.4% |
| 4152848 | 377.1.1.11 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › RecO_C | 0.62 | 50.0 | 3.79e-01 | 98.1% | 39.3% |
| 5065917 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.60 | 40.0 | 3.18e-01 | 70.4% | 76.7% |
| 5050290 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 50.0 | 3.25e-01 | 100.0% | 77.5% |
| 4031266 | 632.2.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA | 0.59 | 49.0 | 4.95e-01 | 100.0% | 100.0% |
| 3284117 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.56 | 41.0 | 3.05e-01 | 77.8% | 34.1% |
| 3360137 | 325.1.7.44 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › KNOX1, KNOX2 | 0.55 | 37.0 | 3.18e-01 | 77.8% | 42.2% |
| 3801470 | 103.5.1.0 ↗ | alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like | 0.54 | 41.0 | 4.28e-01 | 92.6% | 88.0% |
| 3588478 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.53 | 37.0 | 3.98e-01 | 88.9% | 83.3% |
| 3459032 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.53 | 43.0 | 2.81e-01 | 98.1% | 31.7% |
| 4961521 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.53 | 44.0 | 2.86e-01 | 100.0% | 84.6% |
| 4946445 | 5059.1.1.0 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter | 0.52 | 38.0 | 3.08e-01 | 83.3% | 96.7% |
| 3636589 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.51 | 45.0 | 3.82e-01 | 100.0% | 60.0% |
| 3448887 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.50 | 41.0 | 3.66e-01 | 98.1% | 69.4% |