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BML_coassembly_scaffold_108_prodigal-single.1__X__X__00225
Bact-VirBML_coassembly_scaffold_108_prodigal-single.1__X__X__00225
Identity
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-151
Domain cluster:
rep: CG_2015-01t_scaffold_2_prodigal-single.1__X__X__00040__D4-145
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nvaA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 55.0 | 4.38e-01 | 86.6% | 85.8% |
| 2m9mA00 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 38.0 | 3.94e-01 | 79.2% | 64.0% |
| 3u37A02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 48.0 | 4.05e-01 | 81.9% | 97.6% |
| 2gupA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 44.0 | 4.10e-01 | 75.8% | 98.4% |
| 3fcyA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 46.0 | 3.62e-01 | 81.9% | 77.9% |
| 4nesA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.59 | 35.0 | 3.40e-01 | 73.8% | 50.9% |
| 3wdqA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 45.0 | 3.50e-01 | 81.2% | 86.7% |
| 2qhaA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 44.0 | 3.41e-01 | 81.9% | 87.8% |
| 3obwA02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.56 | 42.0 | 4.61e-01 | 77.2% | 100.0% |
| 3v9pB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 43.0 | 3.90e-01 | 80.5% | 91.6% |
| 3bedA00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.56 | 40.0 | 4.25e-01 | 77.9% | 83.8% |
| 2jjmA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.56 | 42.0 | 4.00e-01 | 79.2% | 100.0% |
| 3do6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 44.0 | 3.50e-01 | 84.6% | 77.1% |
| 2yfkA02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.54 | 44.0 | 4.08e-01 | 87.9% | 80.6% |
| 1u6zA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 39.0 | 4.34e-01 | 75.2% | 100.0% |
| 3bzcA03 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.54 | 39.0 | 4.21e-01 | 75.2% | 100.0% |
| 1gkuB05 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 37.0 | 4.07e-01 | 82.6% | 87.6% |
| 2r8bA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 41.0 | 3.70e-01 | 81.2% | 95.1% |
| 1u04A03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 38.0 | 3.65e-01 | 86.6% | 62.4% |
| 4djaA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 33.0 | 3.29e-01 | 78.5% | 57.7% |
| 1xx1A00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.53 | 41.0 | 3.36e-01 | 83.2% | 94.7% |
| 3i9v102 | 3.40.50.11540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NADH-ubiquinone oxidoreductase 51kDa subunit | 0.52 | 41.0 | 3.84e-01 | 81.9% | 82.7% |
| 2f07B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 47.0 | 4.28e-01 | 98.0% | 86.2% |
| 3ppbA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 46.0 | 4.29e-01 | 97.3% | 91.5% |
| 4mixA00 | 3.90.550.20 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.52 | 37.0 | 3.05e-01 | 78.5% | 40.6% |
| 2w42B01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 37.0 | 3.68e-01 | 84.6% | 70.9% |
| 1xngA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 36.0 | 3.11e-01 | 72.5% | 53.0% |
| 1zk8B02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 40.0 | 4.25e-01 | 97.3% | 93.9% |
| 1zitA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 36.0 | 3.98e-01 | 87.9% | 90.9% |
| 7tbvB02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 39.0 | 3.38e-01 | 81.2% | 80.8% |
| 1d5wA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 38.0 | 4.17e-01 | 86.6% | 94.3% |
| 4ltyA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.51 | 41.0 | 3.38e-01 | 87.2% | 92.9% |
| 1udxA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 3.95e-01 | 86.6% | 91.4% |
| 2yogA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 44.0 | 4.01e-01 | 94.0% | 87.8% |
| 3bleA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 38.0 | 3.02e-01 | 78.5% | 64.2% |
| 3thxB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.50 | 37.0 | 3.68e-01 | 75.2% | 83.6% |
| 4p0tB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 41.0 | 4.12e-01 | 86.6% | 89.3% |
| 4rheC00 | 3.40.50.1950 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavin prenyltransferase-like | 0.50 | 40.0 | 3.63e-01 | 84.6% | 90.5% |
| 2ftpA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 38.0 | 3.03e-01 | 79.2% | 75.3% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4136793 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.68 | 60.0 | 5.35e-01 | 96.0% | 98.6% |
| 4938043 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.63 | 45.0 | 4.24e-01 | 72.5% | 93.3% |
| 3741194 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.63 | 48.0 | 3.55e-01 | 81.2% | 96.6% |
| 3677939 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.63 | 44.0 | 4.05e-01 | 71.1% | 97.4% |
| 3191670 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.62 | 44.0 | 3.99e-01 | 72.5% | 98.0% |
| 3699747 | 2484.1.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 | 0.61 | 43.0 | 4.06e-01 | 72.5% | 98.9% |
| 1621265 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.61 | 48.0 | 3.61e-01 | 83.9% | 90.4% |
| 4983075 | 2484.1.1.38 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 | 0.61 | 46.0 | 4.97e-01 | 78.5% | 100.0% |
| 4264624 | 2484.1.1.12 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase | 0.61 | 44.0 | 3.28e-01 | 73.8% | 50.5% |
| 4443623 | 2484.1.1.21 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG | 0.60 | 44.0 | 3.60e-01 | 75.8% | 65.0% |
| 3286462 | 2484.1.1.8 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK | 0.59 | 43.0 | 3.97e-01 | 75.8% | 93.0% |
| 4969494 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.58 | 47.0 | 4.14e-01 | 84.6% | 89.3% |
| 3874263 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.58 | 44.0 | 4.58e-01 | 79.9% | 100.0% |
| 4997386 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.58 | 45.0 | 3.90e-01 | 82.6% | 97.4% |
| 4980276 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.57 | 45.0 | 4.09e-01 | 84.6% | 89.3% |
| 4575406 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.57 | 46.0 | 4.13e-01 | 87.2% | 88.4% |
| 4030032 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.57 | 41.0 | 3.17e-01 | 74.5% | 76.3% |
| 5060795 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.56 | 45.0 | 3.91e-01 | 84.6% | 90.4% |
| 3644907 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.56 | 39.0 | 4.47e-01 | 84.6% | 100.0% |
| 5076534 | 7579.1.1.3 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 | 0.56 | 43.0 | 3.62e-01 | 80.5% | 92.5% |
| 4439031 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.56 | 45.0 | 4.03e-01 | 85.2% | 64.6% |
| 3943554 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.56 | 41.0 | 4.30e-01 | 79.2% | 83.7% |
| 3583362 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.55 | 44.0 | 4.22e-01 | 85.2% | 97.7% |
| 3269295 | 2007.5.1.8 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2 | 0.54 | 44.0 | 3.95e-01 | 86.6% | 94.3% |
| 5043208 | 2006.1.4.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_4 | 0.54 | 37.0 | 3.95e-01 | 79.2% | 77.8% |
| 5026714 | 7569.1.1.2 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › DUF5591 | 0.54 | 42.0 | 3.76e-01 | 82.6% | 84.0% |
| 3379384 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.53 | 31.0 | 3.26e-01 | 78.5% | 60.1% |
| 4864981 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.53 | 40.0 | 3.91e-01 | 86.6% | 70.2% |
| None | — | 0.53 | 37.0 | 3.59e-01 | 71.8% | 94.9% | |
| 4960192 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.52 | 37.0 | 3.55e-01 | 73.8% | 72.8% |
| 4948508 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.52 | 36.0 | 3.60e-01 | 71.8% | 79.4% |
| 4982468 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 39.0 | 3.23e-01 | 78.5% | 94.2% |
| 4013457 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.52 | 42.0 | 3.94e-01 | 87.2% | 87.0% |
| 3729330 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.51 | 40.0 | 3.95e-01 | 84.6% | 75.8% |
| 3695358 | 7590.1.1.3 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi,ArgoMid | 0.51 | 40.0 | 3.94e-01 | 84.6% | 75.8% |
| 2488282 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.51 | 34.0 | 3.82e-01 | 79.9% | 88.5% |
| 4936084 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.51 | 37.0 | 3.49e-01 | 73.8% | 74.4% |
| 5083164 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 37.0 | 3.98e-01 | 75.8% | 94.4% |
| 2550963 | 2005.1.1.19 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 34.0 | 3.82e-01 | 79.9% | 89.5% |
| 4306892 | 2004.1.1.494 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADDB_N, PF27467 | 0.50 | 35.0 | 2.29e-01 | 71.1% | 74.2% |
| 2323953 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.50 | 35.0 | 3.40e-01 | 70.5% | 86.7% |