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BML_coassembly_scaffold_108_prodigal-single.1__X__X__00253
Bact-VirBML_coassembly_scaffold_108_prodigal-single.1__X__X__00253
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-95
Domain cluster:
rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 40.0 | 4.73e-01 | 92.3% | 95.0% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.63 | 44.0 | 4.21e-01 | 98.9% | 61.5% |
| 1kf6A04 | 4.10.80.40 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain | 0.62 | 25.0 | 3.79e-01 | 71.4% | 97.1% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 43.0 | 4.48e-01 | 100.0% | 82.6% |
| 3ptaA03 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 49.0 | 4.03e-01 | 100.0% | 73.8% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 47.0 | 4.05e-01 | 97.8% | 76.3% |
| 2f96A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.54 | 44.0 | 3.50e-01 | 90.1% | 84.6% |
| 1vwxZ00 | 2.30.30.770 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 48.0 | 4.27e-01 | 100.0% | 79.3% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.53 | 38.0 | 3.88e-01 | 92.3% | 75.3% |
| 3t4nA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.52 | 37.0 | 3.67e-01 | 94.5% | 70.8% |
| 4eg9A00 | 2.50.20.40 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.51 | 38.0 | 2.92e-01 | 81.3% | 76.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2167708 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 46.0 | 5.40e-01 | 86.8% | 83.1% |
| 3602785 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 45.0 | 5.38e-01 | 89.0% | 90.0% |
| 4819138 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.75 | 31.0 | 4.16e-01 | 90.1% | 72.3% |
| 3943751 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 41.0 | 4.81e-01 | 85.7% | 78.5% |
| 5038431 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 44.0 | 5.00e-01 | 85.7% | 80.0% |
| 4024727 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 46.0 | 4.42e-01 | 87.9% | 58.7% |
| 5081091 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 54.0 | 5.40e-01 | 89.0% | 86.3% |
| 5060199 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 53.0 | 5.07e-01 | 90.1% | 86.7% |
| 3896126 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.64 | 38.0 | 3.68e-01 | 100.0% | 53.0% |
| 4682079 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.62 | 41.0 | 4.26e-01 | 86.8% | 72.9% |
| 5069300 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.59 | 48.0 | 4.60e-01 | 87.9% | 86.7% |
| 4590247 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.56 | 36.0 | 3.81e-01 | 86.8% | 73.8% |
| 4028518 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.56 | 39.0 | 3.38e-01 | 71.4% | 65.9% |
| 1560725 | 3974.1.1.1 ↗ | beta duplicates or obligate multimers › EBNA-2 N-terminal dimerization (END) domain › EBNA-2 N-terminal dimerization (END) domain › EBNA-2 N-terminal dimerization (END) domain › EBNA2_N | 0.56 | 28.0 | 3.34e-01 | 78.0% | 69.4% |
| 224086 | 9.18.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.55 | 47.0 | 4.05e-01 | 97.8% | 76.3% |
| 4044396 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.54 | 43.0 | 3.43e-01 | 90.1% | 82.9% |
| 3301882 | 5.1.3.116 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 | 0.54 | 43.0 | 2.91e-01 | 85.7% | 68.1% |
| 3622028 | 101.1.2.111 ↗ | alpha arrays › HTH › HTH › winged helix domain › RQC | 0.54 | 28.0 | 2.49e-01 | 70.3% | 31.4% |
| 5082725 | 4056.1.1.9 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Phage_portal_2 | 0.53 | 43.0 | 4.24e-01 | 87.9% | 100.0% |
| 3727689 | 2008.1.1.143 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7924 | 0.52 | 39.0 | 2.83e-01 | 79.1% | 59.6% |
| 4116186 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.52 | 37.0 | 2.91e-01 | 73.6% | 62.1% |
| 4400641 | 4.1.1.397 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29622 | 0.51 | 38.0 | 4.00e-01 | 85.7% | 88.7% |
| 4173092 | 222.2.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Insertion domain in thioesterase › Insertion domain in thioesterase › FAS1_thioest_ins | 0.51 | 39.0 | 3.77e-01 | 83.5% | 98.1% |
| 3262461 | 2.1.1.42 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C | 0.51 | 35.0 | 2.83e-01 | 71.4% | 94.4% |
| 4411025 | 284.1.3.3 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 | 0.51 | 34.0 | 3.66e-01 | 70.3% | 100.0% |
| 3794704 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.50 | 34.0 | 2.29e-01 | 70.3% | 26.6% |
| 3799199 | 60.1.2.0 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain | 0.50 | 34.0 | 2.36e-01 | 70.3% | 30.2% |
| 4134015 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.50 | 40.0 | 3.42e-01 | 89.0% | 65.8% |