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BML_coassembly_scaffold_13_prodigal-single.1__X__X__00007

Bact-Vir

BML_coassembly_scaffold_13_prodigal-single.1__X__X__00007

Identity

Kingdom:
phage

Quality

76.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-115
PDB
Domain cluster: rep: IMGVR_UViG_2811995091_000048-2811995091-2813117581__D1-101
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.64 44.0 5.02e-01 93.9% 97.6%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 43.0 4.84e-01 93.0% 94.2%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.52 31.0 3.64e-01 77.4% 89.0%
1cjxA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 35.0 3.31e-01 70.4% 89.3%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961854 4.1.1.492 ↗ beta barrels › SH3 › SH3 › SH3 › PF26460 0.63 40.0 4.85e-01 93.0% 100.0%
3818230 376.1.2.16 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1-like_CT 0.56 30.0 3.81e-01 77.4% 90.8%
3662009 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.50 40.0 3.76e-01 84.3% 87.9%
D2 medium residues 116-284_357-414
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.67 19.0 2.93e-01 75.8% 56.1%
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.66 32.0 4.43e-01 88.1% 92.7%
3ieyA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 30.0 4.43e-01 88.5% 100.0%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 27.0 3.96e-01 89.4% 91.7%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.53 37.0 3.57e-01 89.4% 60.9%
3dfuA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 25.0 3.22e-01 89.4% 77.5%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.51 32.0 3.71e-01 86.8% 88.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2142345 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.66 29.0 4.42e-01 89.9% 98.9%
4307642 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.65 32.0 4.59e-01 90.7% 100.0%
3591961 2008.2.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.59 28.0 4.03e-01 83.7% 100.0%
3182836 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 34.0 3.84e-01 90.3% 80.6%
5074468 101.1.1.251 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.51 29.0 3.80e-01 72.7% 99.2%