←Back to structures
BML_coassembly_scaffold_13_prodigal-single.1__X__X__00116
Bact-VirBML_coassembly_scaffold_13_prodigal-single.1__X__X__00116
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-101
Domain cluster:
rep: IMGVR_UViG_3300025770_000022-3300025770-Ga0209362_100018334__D18-112
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gaaB00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.57 | 40.0 | 3.03e-01 | 73.7% | 74.4% |
| 1j1fA00 | 3.90.730.10 | Alpha Beta › Alpha-Beta Complex › Ribonuclease Rh; Chain A › Ribonuclease T2-like | 0.56 | 45.0 | 3.64e-01 | 97.9% | 44.0% |
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.54 | 38.0 | 3.35e-01 | 74.7% | 70.2% |
| 2p90A01 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.52 | 46.0 | 3.52e-01 | 98.9% | 86.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4967773 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.63 | 45.0 | 3.79e-01 | 73.7% | 81.2% |
| 3507568 | 207.1.1.218 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27086 | 0.63 | 38.0 | 3.14e-01 | 88.4% | 34.5% |
| 3739141 | 2498.1.1.39 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › SprT-like | 0.62 | 44.0 | 3.96e-01 | 74.7% | 87.4% |
| 4993594 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.62 | 44.0 | 3.68e-01 | 73.7% | 77.6% |
| 4955006 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.60 | 42.0 | 3.85e-01 | 73.7% | 86.9% |
| 4024134 | 2498.1.1.65 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › MATCAP | 0.59 | 44.0 | 2.94e-01 | 78.9% | 21.1% |
| 4993689 | 2498.1.1.49 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PhageMetallopep | 0.59 | 41.0 | 3.78e-01 | 72.6% | 61.6% |
| 4540467 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.59 | 41.0 | 3.32e-01 | 73.7% | 65.6% |
| 4989586 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.57 | 40.0 | 3.45e-01 | 73.7% | 80.6% |
| 5056782 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.56 | 39.0 | 3.01e-01 | 73.7% | 74.2% |
| 4984900 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.55 | 38.0 | 2.97e-01 | 72.6% | 88.3% |
| 3226737 | 7577.1.1.0 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases | 0.53 | 42.0 | 2.92e-01 | 86.3% | 57.6% |
| 4028668 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 34.0 | 3.91e-01 | 94.7% | 95.4% |
| 3541218 | 2004.1.1.589 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › URGCP, URGCP_GTPase | 0.51 | 40.0 | 2.48e-01 | 91.6% | 25.3% |
| 3205109 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.50 | 38.0 | 2.66e-01 | 83.2% | 44.7% |
D2
medium
residues 102-234
Domain cluster:
rep: ALT_09252017_20_scaffold_206_prodigal-single.1__X__X__00195__D91-221
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.65 | 29.0 | 3.78e-01 | 72.2% | 74.3% |
| 2rfbA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.55 | 45.0 | 3.38e-01 | 89.5% | 67.2% |
| 2m6uA00 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.54 | 31.0 | 3.83e-01 | 99.2% | 90.2% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.53 | 34.0 | 3.44e-01 | 100.0% | 63.7% |
| 3rh3A01 | 1.20.120.930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 | 0.52 | 28.0 | 2.86e-01 | 86.5% | 51.9% |
| 3bjdA01 | 1.10.1240.20 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain | 0.51 | 29.0 | 3.54e-01 | 87.2% | 84.1% |
| 1p8dB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.51 | 42.0 | 3.48e-01 | 89.5% | 97.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287762 | 180.1.1.0 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase | 0.55 | 45.0 | 4.04e-01 | 98.5% | 61.0% |
| 3203026 | 3640.1.1.8 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Tri-helical | 0.55 | 36.0 | 4.13e-01 | 79.7% | 93.7% |