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BML_coassembly_scaffold_13_prodigal-single.1__X__X__00328

Bact-Vir

BML_coassembly_scaffold_13_prodigal-single.1__X__X__00328

Identity

Kingdom:
phage

Quality

69.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-56
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 52.0 4.71e-01 100.0% 62.1%
1cwvA05 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.65 43.0 3.37e-01 93.5% 31.0%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.26e-01 97.8% 23.8%
4immA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.15e-01 97.8% 18.1%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.10e-01 97.8% 20.2%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.61 52.0 3.86e-01 97.8% 51.6%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.08e-01 97.8% 34.3%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.12e-01 97.8% 18.0%
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 50.0 3.64e-01 97.8% 68.8%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.15e-01 97.8% 35.3%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 49.0 3.04e-01 97.8% 21.1%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.02e-01 97.8% 17.8%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.60 48.0 4.08e-01 97.8% 53.2%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.13e-01 100.0% 36.0%
3gvpA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 38.0 2.68e-01 80.4% 18.2%
2cnxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 51.0 3.11e-01 97.8% 20.9%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.11e-01 97.8% 21.4%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 48.0 2.98e-01 100.0% 20.4%
5gmkn00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 47.0 2.93e-01 89.1% 31.4%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.60 48.0 3.35e-01 91.3% 36.4%
6az1g01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.12e-01 97.8% 34.7%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.11e-01 100.0% 36.2%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.03e-01 100.0% 22.4%
3tswB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.59 46.0 3.85e-01 93.5% 60.6%
4lg8A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.05e-01 97.8% 21.0%
2ynoA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 50.0 3.07e-01 97.8% 20.8%
1rwiA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 48.0 3.09e-01 100.0% 21.5%
1a0rB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 2.93e-01 97.8% 18.3%
5hqgA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 2.95e-01 97.8% 19.4%
1vyhC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.01e-01 97.8% 39.2%
1erjB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 2.91e-01 97.8% 17.8%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.58 44.0 3.72e-01 100.0% 50.5%
6whjD00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 48.0 2.98e-01 100.0% 19.7%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 36.0 3.98e-01 93.5% 84.8%
3bvxA04 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.57 46.0 2.94e-01 97.8% 34.3%
5cq2A02 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 39.0 4.06e-01 97.8% 74.4%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.88e-01 100.0% 34.8%
3jb9L00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.87e-01 97.8% 21.2%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 48.0 2.89e-01 100.0% 17.2%
3hrpA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.55 42.0 2.71e-01 100.0% 25.3%
3looB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 44.0 2.83e-01 100.0% 22.3%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 42.0 2.71e-01 100.0% 16.7%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 37.0 3.30e-01 97.8% 46.6%
3rpfA00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.53 37.0 2.76e-01 76.1% 60.7%
1xhbA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.52 44.0 2.83e-01 97.8% 33.5%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.52 42.0 2.96e-01 100.0% 34.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.51e-01 91.3% 68.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4341865 4325.1.1.1 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.77 67.0 6.36e-01 100.0% 81.8%
4961481 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.76 65.0 5.68e-01 97.8% 62.9%
4889754 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.67 43.0 4.01e-01 100.0% 50.0%
4026161 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.67 41.0 2.95e-01 89.1% 21.6%
3954708 4325.1.1.9 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 0.67 57.0 5.55e-01 97.8% 88.0%
3790839 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.65 42.0 4.10e-01 93.5% 60.0%
4279904 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 45.0 2.81e-01 100.0% 13.1%
3615657 5.1.5.115 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_WDR3_2nd 0.63 53.0 3.21e-01 97.8% 19.1%
3169243 5.1.5.78 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, eIF2A, ANAPC4_WD40 0.63 53.0 3.14e-01 100.0% 16.4%
3629643 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.63 53.0 3.20e-01 100.0% 22.3%
3908594 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 50.0 3.02e-01 93.5% 20.0%
3714979 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.62 51.0 3.05e-01 100.0% 68.7%
3499627 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.62 53.0 4.05e-01 97.8% 58.2%
3889927 5.1.5.75 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.62 53.0 3.49e-01 97.8% 31.0%
3532206 5.1.5.76 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.62 52.0 3.18e-01 97.8% 21.1%
3992209 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 47.0 4.81e-01 93.5% 84.4%
3592883 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.61 52.0 3.05e-01 97.8% 15.4%
3484214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 40.0 2.68e-01 93.5% 17.9%
3382432 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 51.0 3.10e-01 97.8% 19.7%
3906480 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 51.0 3.10e-01 95.7% 17.5%
3186220 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 51.0 3.05e-01 97.8% 15.8%
3415131 5.1.4.350 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR41 0.61 51.0 3.07e-01 97.8% 27.0%
3882151 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.61 50.0 3.09e-01 97.8% 33.7%
3351082 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 52.0 3.54e-01 100.0% 58.9%
1756814 5.1.5.76 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.61 52.0 3.14e-01 97.8% 23.0%
3596555 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 51.0 3.10e-01 97.8% 19.7%
3934793 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 52.0 3.10e-01 100.0% 26.4%
None 0.60 50.0 3.04e-01 97.8% 31.3%
3844766 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 51.0 2.99e-01 97.8% 16.5%
3079908 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.60 51.0 3.05e-01 100.0% 17.4%
3611899 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.60 49.0 3.08e-01 97.8% 22.4%
3759716 358.2.1.1 a+b complex topology › SRCR-like › A heparin-binding domain › A heparin-binding domain › APP_N 0.60 47.0 3.93e-01 97.8% 52.6%
3225979 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 3.01e-01 97.8% 16.7%
3792452 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 3.08e-01 100.0% 35.1%
3568187 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 38.0 4.06e-01 97.8% 85.7%
None 0.59 50.0 3.05e-01 97.8% 19.1%
None 0.59 51.0 3.55e-01 97.8% 40.0%
3637063 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 50.0 3.20e-01 100.0% 42.7%
3656729 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.59 47.0 3.52e-01 95.7% 45.1%
4025577 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.59 40.0 2.63e-01 97.8% 17.3%
3699700 5.1.4.263 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_2nd 0.59 50.0 2.76e-01 100.0% 17.3%
3351121 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.59 48.0 3.64e-01 97.8% 49.6%
2832127 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 49.0 3.00e-01 97.8% 19.9%
3875079 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 49.0 2.95e-01 100.0% 27.2%
5044447 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.59 50.0 2.98e-01 100.0% 17.7%
3249876 5.1.4.254 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_NOL10_N 0.58 49.0 3.03e-01 97.8% 20.3%
5079725 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 46.0 4.37e-01 100.0% 73.3%
4875720 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 49.0 3.41e-01 97.8% 40.3%
3507975 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.58 49.0 3.00e-01 97.8% 21.3%
3939610 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 48.0 2.96e-01 97.8% 20.1%
3825153 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 48.0 2.80e-01 97.8% 14.4%
3782896 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 48.0 2.90e-01 100.0% 47.7%
3503638 5.1.3.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.57 45.0 3.15e-01 97.8% 32.8%
3512009 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.56 44.0 3.48e-01 100.0% 52.0%
3299921 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.56 46.0 3.45e-01 93.5% 36.8%
3504014 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 45.0 2.80e-01 97.8% 20.6%
4029784 109.21.1.3 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.56 36.0 2.25e-01 82.6% 9.8%
4003613 109.46.1.9 alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) › WD40 0.56 46.0 2.67e-01 97.8% 68.1%
3649239 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 45.0 2.70e-01 100.0% 16.3%
3969749 708.1.2.6 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.54 44.0 3.23e-01 91.3% 65.6%
1759644 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.53 43.0 3.29e-01 100.0% 37.2%
3730875 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 42.0 3.49e-01 100.0% 50.5%
6632 241.1.1.1 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Invas_SpaK 0.52 41.0 3.18e-01 100.0% 64.9%
3243842 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 40.0 3.20e-01 93.5% 78.2%
1140051 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.51 35.0 3.45e-01 91.3% 65.3%