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BML_coassembly_scaffold_13_prodigal-single.1__X__X__00355
Bact-VirBML_coassembly_scaffold_13_prodigal-single.1__X__X__00355
Identity
- Kingdom:
- phage
Quality
75.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-63
Domain cluster:
rep: IMGVR_UViG_3300026210_000034-3300026210-Ga0208642_100111024__D2-62
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7afrX02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.68 | 52.0 | 5.29e-01 | 91.8% | 85.0% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.64 | 53.0 | 5.16e-01 | 93.4% | 83.6% |
| 6y79C01 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.64 | 46.0 | 2.83e-01 | 77.0% | 97.6% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 44.0 | 4.45e-01 | 90.2% | 76.7% |
| 3a7rA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.57 | 44.0 | 3.92e-01 | 85.2% | 96.6% |
| 2aj2A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.56 | 47.0 | 4.15e-01 | 98.4% | 66.0% |
| 4g54A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 47.0 | 3.87e-01 | 100.0% | 52.8% |
| 2kzxA00 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.54 | 45.0 | 3.69e-01 | 100.0% | 96.2% |
| 6iikB00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 44.0 | 2.82e-01 | 95.1% | 18.3% |
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 3.81e-01 | 86.9% | 75.0% |
| 2dp9A01 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.53 | 37.0 | 3.23e-01 | 75.4% | 94.0% |
| 4ytlA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 4.01e-01 | 88.5% | 96.0% |
| 1v89A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 42.0 | 3.44e-01 | 90.2% | 76.3% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 43.0 | 3.26e-01 | 96.7% | 89.4% |
| 3r07C00 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.52 | 40.0 | 3.66e-01 | 86.9% | 96.6% |
| 8p2aA01 | 3.90.1010.20 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.52 | 42.0 | 3.79e-01 | 90.2% | 98.9% |
| 2codA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 40.0 | 3.58e-01 | 90.2% | 80.2% |
| 4nswA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 41.0 | 3.49e-01 | 90.2% | 76.1% |
| 3uepA00 | 2.30.330.10 | Mainly Beta › Roll › Surface presentation of antigens (SPOA) › SpoA-like | 0.51 | 34.0 | 3.18e-01 | 70.5% | 77.6% |
| 1p1mA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.51 | 40.0 | 3.42e-01 | 86.9% | 86.4% |
| 1c16A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.50 | 44.0 | 3.26e-01 | 100.0% | 89.6% |
| 2imrA01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.50 | 37.0 | 3.65e-01 | 85.2% | 94.2% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030565 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.66 | 38.0 | 3.65e-01 | 72.1% | 48.6% |
| 3928388 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.65 | 47.0 | 3.24e-01 | 77.0% | 26.0% |
| 3707365 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 45.0 | 3.98e-01 | 75.4% | 75.6% |
| 3694719 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.60 | 49.0 | 3.20e-01 | 90.2% | 72.4% |
| 4000199 | 3794.1.1.3 ↗ | a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT | 0.60 | 37.0 | 3.47e-01 | 70.5% | 48.8% |
| 3978651 | 241.13.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA › Sif | 0.59 | 39.0 | 3.31e-01 | 72.1% | 40.0% |
| 4015968 | 633.33.1.1 ↗ | alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz | 0.57 | 45.0 | 3.05e-01 | 90.2% | 73.1% |
| 3416385 | 3257.1.1.1 ↗ | a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N | 0.56 | 46.0 | 3.40e-01 | 100.0% | 93.3% |
| 2798302 | 517.2.1.1 ↗ | beta barrels › CBF-like › TraF › TraF › TrbI | 0.56 | 41.0 | 3.42e-01 | 82.0% | 47.0% |
| 3550081 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.54 | 46.0 | 3.35e-01 | 100.0% | 81.6% |
| 3927363 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 37.0 | 4.01e-01 | 90.2% | 90.0% |
| 3600727 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 39.0 | 2.57e-01 | 83.6% | 41.8% |
| 5002621 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 44.0 | 2.98e-01 | 98.4% | 26.4% |
| 4144910 | 244.3.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C | 0.53 | 39.0 | 3.61e-01 | 82.0% | 98.8% |
| 3581854 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 39.0 | 3.52e-01 | 100.0% | 55.6% |
| 3964807 | 9.7.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › PF28291 | 0.53 | 40.0 | 3.61e-01 | 88.5% | 100.0% |
| 4583705 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.52 | 41.0 | 2.75e-01 | 93.4% | 19.3% |
| 3625264 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 41.0 | 3.67e-01 | 96.7% | 91.6% |
| 5033945 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.51 | 35.0 | 3.42e-01 | 73.8% | 81.4% |
| 3519125 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 36.0 | 3.89e-01 | 88.5% | 96.0% |
| 3934726 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.50 | 34.0 | 3.68e-01 | 72.1% | 94.0% |
| 3521727 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.50 | 42.0 | 3.05e-01 | 96.7% | 87.0% |
| 3884395 | 233.1.1.3 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha | 0.50 | 37.0 | 3.32e-01 | 100.0% | 54.4% |
| 3198829 | 220.1.1.43 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH | 0.50 | 38.0 | 3.24e-01 | 90.2% | 76.7% |
| 3604572 | 243.6.1.1 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 | 0.50 | 31.0 | 3.08e-01 | 70.5% | 52.9% |
D2
medium
residues 81-120
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04434.23 best | SWIM | 26.3 | 5.90e-06 | 62.5% | 79.0% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gv9A03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 49.0 | 3.20e-01 | 100.0% | 94.6% |
| 1qh5A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.61 | 51.0 | 3.16e-01 | 100.0% | 16.2% |
| 3l9aX01 | 3.30.720.180 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 47.0 | 3.94e-01 | 100.0% | 92.0% |
| 1fneA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.55 | 43.0 | 3.67e-01 | 100.0% | 51.9% |
| 3kk7A03 | 3.30.160.840 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 40.0 | 3.59e-01 | 97.5% | 54.8% |
| 2fmlA02 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 40.0 | 2.93e-01 | 100.0% | 24.4% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3733511 | 1195.1.1.1 ↗ | a+b complex topology › Suppressor of hydroxyurea sensitivity protein 2 › Suppressor of hydroxyurea sensitivity protein 2 › Suppressor of hydroxyurea sensitivity protein 2 › SWIM | 0.87 | 77.0 | 5.00e-01 | 100.0% | 50.3% |
| 3371949 | 3164.1.1.2 ↗ | few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › SWIM | 0.70 | 57.0 | 5.17e-01 | 100.0% | 78.3% |
| 4926837 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 47.0 | 4.31e-01 | 97.5% | 76.7% |
| 4239781 | 3006.1.1.6 ↗ | a+b two layers › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › Sm-Like archaeal protein Smap3, C-terminal domain › CPSF73-100_C | 0.57 | 47.0 | 4.03e-01 | 100.0% | 55.7% |
| 3455026 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.54 | 42.0 | 4.03e-01 | 92.5% | 78.0% |
| 4929702 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 42.0 | 4.01e-01 | 95.0% | 80.0% |