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BML_coassembly_scaffold_13_prodigal-single.1__X__X__00444

Bact-Vir

BML_coassembly_scaffold_13_prodigal-single.1__X__X__00444

Identity

Kingdom:
phage

Quality

95.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 36-171
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00478.32 best IMPDH 50.8 1.80e-13 93.4% 38.6%
CATH (71)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a7rD00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.97 95.0 6.84e-01 100.0% 43.5%
3r2gA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.91 85.0 6.15e-01 100.0% 40.6%
1eepA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.88 84.0 6.20e-01 100.0% 46.5%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.88 84.0 5.54e-01 100.0% 55.0%
1ypfA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.85 80.0 6.00e-01 100.0% 45.4%
2oztA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.80 59.0 5.11e-01 76.5% 54.7%
3dxiA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.77 66.0 5.05e-01 91.9% 52.2%
2gjlA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.76 71.0 5.22e-01 100.0% 41.4%
4nicA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.75 47.0 5.08e-01 88.2% 72.6%
3bg3A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.75 69.0 5.18e-01 100.0% 73.8%
1nf7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 69.0 4.72e-01 100.0% 65.2%
4ldaB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.74 48.0 4.95e-01 89.0% 69.3%
1q6oB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 69.0 5.81e-01 99.3% 86.0%
3erpA01 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.74 68.0 5.23e-01 100.0% 86.6%
3qfeB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.73 65.0 4.98e-01 96.3% 52.0%
3h5dA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.73 66.0 5.11e-01 99.3% 55.4%
3ugvA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.72 63.0 5.17e-01 93.4% 58.9%
3vxgA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.72 66.0 5.06e-01 100.0% 83.3%
1a3wA02 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.72 66.0 5.48e-01 100.0% 88.1%
3qtgA01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.71 65.0 5.33e-01 98.5% 98.3%
5kinC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 66.0 5.31e-01 100.0% 84.5%
1l6wA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 66.0 5.56e-01 100.0% 83.2%
2qezE03 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.71 65.0 5.02e-01 99.3% 68.9%
3di1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 64.0 4.99e-01 100.0% 63.4%
3gy1B02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.70 64.0 5.30e-01 99.3% 84.0%
4exbB00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.70 64.0 5.20e-01 100.0% 85.9%
1bqgA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.70 60.0 4.82e-01 92.6% 52.3%
3zssA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.70 64.0 4.64e-01 100.0% 63.8%
1sfjB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 62.0 5.25e-01 99.3% 88.0%
2yw3E00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 63.0 5.49e-01 99.3% 97.5%
1vhcF00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.68 63.0 5.34e-01 99.3% 94.8%
3mt1B02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.68 62.0 5.29e-01 98.5% 86.3%
1fhvA01 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.68 59.0 5.16e-01 93.4% 67.2%
6l25A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.68 58.0 4.73e-01 93.4% 58.8%
2basB01 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.68 62.0 5.21e-01 100.0% 88.5%
3i6eA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.67 61.0 4.95e-01 98.5% 75.1%
3tfxA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 61.0 5.11e-01 100.0% 76.6%
1a5aA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 60.0 4.89e-01 100.0% 82.4%
1o1zA00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.66 60.0 5.06e-01 99.3% 92.9%
1vqtA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 59.0 5.25e-01 100.0% 77.5%
3hdvB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 45.0 4.72e-01 82.4% 83.3%
3thoB01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 53.0 4.35e-01 95.6% 84.2%
3qxcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 49.0 4.21e-01 88.2% 85.3%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 49.0 4.55e-01 91.9% 85.0%
3m1lA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 53.0 4.61e-01 98.5% 98.1%
1dg3A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 47.0 3.97e-01 86.8% 80.8%
1nijA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 4.05e-01 82.4% 91.0%
2qxyA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 47.0 5.01e-01 93.4% 97.5%
4pioA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 50.0 4.54e-01 92.6% 89.0%
2wj6A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 50.0 4.36e-01 93.4% 84.8%
3qq5A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 50.0 4.68e-01 93.4% 87.8%
4bxoA01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 41.0 4.20e-01 75.7% 74.8%
3eqzB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 44.0 4.57e-01 83.8% 90.4%
2p4gA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.56 43.0 3.60e-01 82.4% 57.3%
5uqiA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.55 43.0 3.89e-01 89.7% 59.6%
4kxvA02 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.55 48.0 4.26e-01 94.1% 98.5%
1yt8A02 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.55 37.0 4.10e-01 87.5% 85.2%
1iqpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 4.32e-01 94.9% 73.8%
1q6zA03 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.54 42.0 3.82e-01 81.6% 87.5%
4ao8A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 43.0 3.66e-01 86.0% 77.4%
2nvwB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 46.0 4.13e-01 94.1% 91.8%
3x2fB01 3.40.50.1480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Adenosylhomocysteinase-like 0.54 43.0 3.68e-01 86.0% 82.8%
3sy8A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 46.0 4.65e-01 93.4% 94.9%
2napA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 45.0 3.54e-01 92.6% 78.3%
2qgzA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.98e-01 87.5% 89.8%
3tbfA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 44.0 4.28e-01 89.7% 81.2%
3fxaA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.53 42.0 3.81e-01 90.4% 61.3%
1rifA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 46.0 4.19e-01 100.0% 79.2%
2xblD00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.52 44.0 3.97e-01 93.4% 78.5%
4g0mA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 40.0 4.09e-01 84.6% 99.3%
3etnB00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 42.0 3.81e-01 93.4% 69.2%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3555073 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.97 95.0 6.72e-01 100.0% 40.2%
3627326 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.97 95.0 6.66e-01 100.0% 39.7%
4173173 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.97 95.0 6.66e-01 100.0% 39.4%
4414431 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.97 94.0 6.81e-01 100.0% 43.4%
3577434 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.96 94.0 7.77e-01 100.0% 65.1%
142885 2002.1.1.263 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh 0.91 85.0 6.15e-01 100.0% 40.6%
2034325 2002.1.1.280 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, NMO 0.89 85.0 6.04e-01 100.0% 39.0%
None 0.88 83.0 6.06e-01 100.0% 41.6%
4586408 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.88 84.0 5.82e-01 100.0% 46.6%
3946353 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.88 84.0 6.79e-01 100.0% 61.3%
5062271 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.88 81.0 5.74e-01 100.0% 36.6%
3595276 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.88 84.0 5.78e-01 100.0% 39.0%
None 0.87 84.0 5.66e-01 100.0% 36.0%
4468948 2002.1.1.263 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh 0.87 84.0 5.64e-01 100.0% 35.4%
1117705 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.87 84.0 5.76e-01 100.0% 37.2%
4151696 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.87 80.0 5.86e-01 100.0% 40.2%
4157113 2002.1.1.280 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, NMO 0.86 81.0 5.88e-01 100.0% 41.2%
3589689 2002.1.1.263 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh 0.86 80.0 5.88e-01 100.0% 41.2%
None 0.86 82.0 5.76e-01 100.0% 38.9%
4169100 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.85 82.0 5.72e-01 100.0% 39.6%
4226134 2002.1.1.263 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh 0.85 80.0 5.84e-01 100.0% 40.9%
None 0.80 72.0 5.45e-01 96.3% 66.3%
3689662 2002.1.1.108 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.77 71.0 5.22e-01 100.0% 40.6%
5033926 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.75 70.0 5.76e-01 100.0% 78.3%
3967116 2002.1.1.222 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DUF934 0.75 62.0 5.89e-01 100.0% 74.4%
4075819 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.75 69.0 5.15e-01 99.3% 73.4%
4047543 2002.1.1.131 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › 4HFCP_synth 0.75 69.0 5.83e-01 100.0% 85.0%
4978361 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.74 65.0 4.80e-01 93.4% 70.4%
4975287 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.73 64.0 4.79e-01 94.1% 83.6%
4926841 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.73 67.0 5.14e-01 100.0% 71.7%
3003998 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.73 67.0 5.60e-01 100.0% 75.4%
4158902 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.72 63.0 5.08e-01 93.4% 70.8%
None 0.72 64.0 4.72e-01 95.6% 61.5%
5052161 2002.1.1.29 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHDPS 0.71 63.0 4.75e-01 96.3% 57.0%
5074897 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.71 64.0 4.78e-01 98.5% 90.7%
5024528 2002.1.1.174 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C 0.69 61.0 4.81e-01 97.1% 74.7%
4056151 2002.5.1.1 a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.69 63.0 5.34e-01 99.3% 80.0%
4064654 2002.1.1.9 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase 0.68 62.0 5.13e-01 98.5% 73.6%
4981962 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.68 62.0 5.78e-01 100.0% 85.9%
5052061 2002.1.1.236 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS 0.66 62.0 5.66e-01 100.0% 89.7%
5067003 2002.1.1.236 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHQS 0.66 61.0 5.41e-01 100.0% 85.3%
4407498 2002.1.1.66 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.64 57.0 4.92e-01 100.0% 85.5%
5063310 2004.1.1.206 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_31 0.63 52.0 4.29e-01 86.8% 94.0%
4467045 2002.1.1.66 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.62 56.0 4.86e-01 100.0% 86.2%
4420331 2002.1.1.66 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.61 55.0 4.80e-01 100.0% 86.7%
5022729 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.61 52.0 4.47e-01 92.6% 94.9%
4441779 2004.1.1.201 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.61 53.0 4.48e-01 93.4% 99.5%
3939075 207.1.1.156 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.61 50.0 3.64e-01 90.4% 48.1%
3940679 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 50.0 3.53e-01 90.4% 44.4%
4938803 2007.3.1.3 a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Succ_CoA_lig 0.61 44.0 4.03e-01 74.3% 87.4%
4956618 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 51.0 4.59e-01 92.6% 87.0%
3929518 207.1.1.156 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27094 0.59 49.0 3.50e-01 90.4% 52.6%
3308028 7512.1.1.50 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_5 0.58 49.0 4.32e-01 91.9% 92.5%
4351028 2005.1.1.13 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.58 45.0 3.97e-01 83.1% 81.4%
3852401 2004.1.1.512 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › URGCP 0.58 49.0 3.85e-01 92.6% 60.0%
3822961 207.1.1.77 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBD 0.58 46.0 3.60e-01 85.3% 70.8%
3229304 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.57 46.0 3.29e-01 86.0% 43.3%
5023800 2006.1.6.12 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 0.57 49.0 4.49e-01 95.6% 95.1%
4025771 2004.1.1.209 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activ_2 0.57 46.0 4.49e-01 94.9% 78.0%
4191148 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.57 50.0 4.35e-01 100.0% 86.5%
4938031 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.56 48.0 4.26e-01 92.6% 97.4%
3271368 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 47.0 3.82e-01 92.6% 88.1%
3738034 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.55 45.0 4.00e-01 86.8% 85.6%
3744163 2003.1.5.95 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM13 0.55 49.0 3.78e-01 98.5% 84.8%
None 0.55 46.0 4.47e-01 94.9% 80.0%
3501917 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 44.0 3.77e-01 89.7% 90.4%
3273935 2003.1.1.61 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR 0.53 46.0 3.69e-01 99.3% 79.7%
3404583 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 42.0 3.32e-01 88.2% 50.5%
3741489 2004.1.1.189 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_16 0.52 45.0 3.72e-01 97.1% 96.5%
4933399 2007.1.14.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.52 40.0 4.19e-01 100.0% 91.2%
3941477 2007.1.3.1 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg 0.51 42.0 4.33e-01 94.1% 93.1%
3587649 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.51 43.0 3.78e-01 90.4% 66.5%
4025917 2007.6.1.4 a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › SIS 0.51 43.0 3.81e-01 93.4% 62.9%
4570260 2004.1.1.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.50 45.0 3.92e-01 100.0% 71.4%
D2 medium residues 172-229
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00478.32 best IMPDH 74.5 1.10e-20 100.0% 16.5%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2a7rD00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.99 95.0 5.71e-01 100.0% 18.3%
1nf7A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.97 92.0 5.27e-01 100.0% 12.8%
1eepA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.88 82.0 5.00e-01 100.0% 18.5%
4gj1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.79 56.0 3.71e-01 100.0% 19.2%
1duvG01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.72 43.0 3.18e-01 84.5% 23.3%
1vcvA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 64.0 4.27e-01 100.0% 26.5%
4njmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.70 42.0 3.20e-01 82.8% 25.5%
1b6sA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.69 39.0 3.73e-01 84.5% 45.7%
1wu7A03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.69 42.0 3.57e-01 84.5% 36.1%
2pgwA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.67 51.0 3.45e-01 100.0% 21.7%
2nqlA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.66 52.0 3.52e-01 100.0% 23.2%
2ps2A02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.66 49.0 3.31e-01 100.0% 20.2%
1vm6B01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 43.0 3.31e-01 100.0% 29.6%
3inpA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 53.0 3.60e-01 100.0% 24.8%
3v7eA00 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.64 37.0 3.33e-01 81.0% 39.5%
3ijpB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 42.0 3.08e-01 100.0% 25.8%
3g87A01 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.62 52.0 3.63e-01 100.0% 97.3%
4dqnA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.61 42.0 3.09e-01 72.4% 40.5%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.61 37.0 3.35e-01 81.0% 41.7%
3g3sA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 49.0 3.84e-01 100.0% 39.8%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 40.0 3.54e-01 81.0% 45.3%
3qokA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.60 52.0 3.35e-01 100.0% 21.9%
3qyfA01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.59 49.0 3.69e-01 100.0% 78.2%
1qe0A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.59 37.0 3.30e-01 84.5% 39.6%
1z9hA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 34.0 3.14e-01 82.8% 41.2%
3cnlA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 41.0 3.11e-01 100.0% 31.9%
2g2qB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 35.0 2.89e-01 81.0% 30.7%
4bqqA01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.57 44.0 3.32e-01 82.8% 35.7%
7yq0B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.54e-01 100.0% 36.7%
2e87A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 3.13e-01 100.0% 26.7%
3luaA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 47.0 3.76e-01 98.3% 75.2%
6hcdD00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 48.0 3.74e-01 100.0% 43.7%
3e8mA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 48.0 3.54e-01 100.0% 37.2%
3zx4A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 46.0 3.48e-01 100.0% 77.3%
3ngxA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.55 47.0 4.25e-01 100.0% 89.3%
2b4yA01 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.55 45.0 3.37e-01 100.0% 35.5%
2yutA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 40.0 2.84e-01 81.0% 24.9%
6ln3A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.22e-01 100.0% 43.1%
5j72A01 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.54 40.0 2.88e-01 84.5% 28.7%
3re1A01 3.40.50.10090 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 42.0 3.41e-01 93.1% 68.9%
6smyB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 3.44e-01 100.0% 54.2%
2xb4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.03e-01 100.0% 30.9%
2obbA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 44.0 3.52e-01 100.0% 52.1%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 42.0 3.06e-01 100.0% 35.2%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3555073 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 1.00 97.0 5.70e-01 100.0% 16.9%
4173173 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 1.00 97.0 5.68e-01 100.0% 16.6%
4169100 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 1.00 96.0 5.61e-01 100.0% 15.5%
None 0.99 96.0 5.59e-01 100.0% 15.8%
None 0.99 96.0 5.71e-01 100.0% 18.1%
2034325 2002.1.1.280 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, NMO 0.99 95.0 5.59e-01 100.0% 16.8%
None 0.98 94.0 5.51e-01 100.0% 15.7%
3958826 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.98 94.0 6.34e-01 100.0% 33.1%
None 0.98 94.0 5.47e-01 100.0% 15.5%
3595276 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.97 93.0 5.39e-01 100.0% 14.7%
None 0.97 93.0 5.41e-01 100.0% 15.3%
4967106 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.97 92.0 5.43e-01 100.0% 15.9%
2874843 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.97 92.0 5.67e-01 100.0% 21.6%
None 0.97 91.0 5.27e-01 100.0% 13.6%
4468948 2002.1.1.263 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH, FMN_dh 0.96 91.0 5.24e-01 100.0% 13.5%
5057903 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.95 90.0 5.38e-01 100.0% 17.6%
5059228 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.95 90.0 5.28e-01 100.0% 17.3%
4421577 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.95 90.0 5.26e-01 100.0% 16.9%
None 0.92 85.0 5.06e-01 100.0% 16.2%
5049660 2002.1.1.23 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › IMPDH 0.91 84.0 5.02e-01 100.0% 16.7%
4013187 2002.1.1.108 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.78 66.0 4.35e-01 100.0% 23.4%
4983773 2007.1.3.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.70 51.0 3.59e-01 100.0% 24.9%
1397696 2003.1.11.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Formate/glycerate dehydrogenase catalytic domain-like › 2-Hacid_dh 0.70 42.0 3.42e-01 82.8% 31.8%
143625 2007.1.8.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Uroporphyrinogen III synthase (U3S, HemD) 0.69 38.0 4.41e-01 81.0% 81.1%
3931281 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.68 45.0 3.15e-01 100.0% 20.5%
5026056 2002.1.1.13 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red 0.68 58.0 3.70e-01 100.0% 30.3%
4339124 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.66 39.0 3.94e-01 82.8% 56.7%
5064022 2005.1.1.13 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like 0.65 46.0 3.38e-01 81.0% 26.5%
4370920 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.64 39.0 3.32e-01 82.8% 35.0%
3831671 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.64 54.0 3.83e-01 100.0% 83.6%
4964882 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.63 52.0 3.41e-01 100.0% 49.2%
4978576 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.62 49.0 3.12e-01 100.0% 17.5%
4203176 7502.1.1.6 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HisZ_C 0.62 36.0 3.54e-01 82.8% 50.8%
4499045 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.61 46.0 3.27e-01 100.0% 25.8%
4002667 2006.1.6.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Ku_N 0.60 50.0 3.48e-01 100.0% 88.2%
5068046 2004.1.1.1200 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF835 0.59 51.0 3.80e-01 100.0% 85.6%
4444716 7502.1.1.6 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HisZ_C 0.59 35.0 3.51e-01 84.5% 55.0%
3978414 2002.1.1.8 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase 0.59 50.0 3.21e-01 100.0% 26.2%
3670753 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.57 43.0 2.97e-01 100.0% 21.8%
4971822 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 43.0 3.03e-01 81.0% 84.0%
4319242 7579.1.1.9 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase 0.56 48.0 3.22e-01 100.0% 29.4%
3178842 2012.1.1.2 a/b three-layered sandwiches › LigB-like › LigB-like › LigB-like › LigB 0.56 47.0 3.10e-01 100.0% 83.9%
5065181 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 37.0 3.30e-01 81.0% 47.1%
5063545 2003.1.10.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.54 40.0 3.46e-01 81.0% 49.5%
4018869 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 46.0 2.79e-01 100.0% 20.0%
4972374 7589.1.1.2 a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C 0.54 40.0 2.99e-01 86.2% 91.3%
4969850 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 45.0 2.87e-01 100.0% 59.7%
4962801 7516.1.1.24 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 0.53 43.0 3.06e-01 94.8% 29.2%
3782056 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 40.0 2.90e-01 98.3% 84.8%