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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00134

Bact-Vir

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00134

Identity

Kingdom:
phage

Quality

87.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-99
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4euuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.68 48.0 4.20e-01 74.6% 49.4%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 45.0 3.91e-01 79.7% 46.2%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 51.0 4.13e-01 89.8% 91.7%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 44.0 3.72e-01 81.4% 41.3%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 4.29e-01 76.3% 78.8%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.62 39.0 3.41e-01 83.1% 40.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 42.0 4.22e-01 83.1% 70.5%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 49.0 3.08e-01 94.9% 40.9%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 49.0 2.97e-01 91.5% 40.6%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 42.0 4.06e-01 78.0% 64.2%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 50.0 4.88e-01 100.0% 84.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.21e-01 83.1% 78.7%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 47.0 3.02e-01 89.8% 23.4%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.76e-01 100.0% 77.3%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 46.0 4.24e-01 89.8% 86.7%
2zplB00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.59 45.0 3.90e-01 83.1% 87.2%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 44.0 3.01e-01 88.1% 62.5%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 41.0 3.60e-01 78.0% 86.5%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 37.0 4.02e-01 74.6% 84.4%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 44.0 2.99e-01 88.1% 52.5%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.57 44.0 3.38e-01 86.4% 68.0%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.73e-01 89.8% 61.1%
7rpyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.70e-01 84.7% 88.3%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 49.0 4.76e-01 100.0% 90.9%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 34.0 3.21e-01 74.6% 47.2%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 43.0 2.98e-01 84.7% 79.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 40.0 3.76e-01 76.3% 66.7%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.56 44.0 3.39e-01 88.1% 76.0%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 40.0 4.08e-01 79.7% 79.3%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.56 48.0 4.08e-01 100.0% 89.4%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 41.0 3.39e-01 79.7% 71.2%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 42.0 2.75e-01 86.4% 28.6%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.56 41.0 3.61e-01 91.5% 52.8%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.56 46.0 3.29e-01 100.0% 31.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.23e-01 89.8% 84.8%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 37.0 3.34e-01 79.7% 46.7%
6gmhH01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 39.0 3.00e-01 76.3% 31.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.21e-01 89.8% 88.9%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 3.45e-01 89.8% 95.0%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.54 42.0 3.31e-01 89.8% 80.4%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 4.08e-01 86.4% 80.0%
2l0cA00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 38.0 3.34e-01 76.3% 60.8%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 43.0 3.32e-01 100.0% 37.2%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 39.0 3.84e-01 79.7% 75.0%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.53 43.0 3.63e-01 100.0% 92.4%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.21e-01 88.1% 65.0%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 3.89e-01 100.0% 96.8%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 41.0 2.68e-01 91.5% 67.1%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 36.0 3.02e-01 72.9% 83.6%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.52 42.0 3.58e-01 91.5% 66.0%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 38.0 2.89e-01 79.7% 39.1%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 42.0 3.06e-01 96.6% 67.2%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 41.0 3.61e-01 98.3% 76.0%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 38.0 3.09e-01 84.7% 89.1%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.51 34.0 3.22e-01 74.6% 53.9%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.27e-01 100.0% 67.5%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 38.0 2.66e-01 84.7% 75.7%
1tqzA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 38.0 3.13e-01 86.4% 92.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4309111 4321.1.1.3 a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › PgdA_N 0.68 59.0 4.01e-01 100.0% 56.9%
3164021 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 45.0 3.57e-01 78.0% 34.6%
4325086 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.64 45.0 3.81e-01 81.4% 43.7%
5037801 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 50.0 4.45e-01 89.8% 80.9%
4426764 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.63 45.0 3.78e-01 81.4% 43.7%
5021205 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 46.0 3.67e-01 81.4% 46.9%
4457428 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.63 47.0 3.92e-01 83.1% 56.4%
3790784 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.63 45.0 2.97e-01 79.7% 17.4%
4399266 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.63 47.0 3.86e-01 83.1% 45.2%
4660580 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.62 47.0 3.78e-01 81.4% 42.6%
4123140 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.62 46.0 3.89e-01 83.1% 45.4%
4636455 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.62 42.0 4.64e-01 71.2% 100.0%
4994226 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 46.0 3.67e-01 81.4% 44.8%
3969312 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.62 42.0 4.07e-01 78.0% 61.4%
4935198 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.62 51.0 3.77e-01 93.2% 91.9%
4436471 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.62 44.0 3.73e-01 81.4% 43.8%
4587696 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.61 45.0 3.89e-01 81.4% 51.0%
3239140 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 49.0 3.15e-01 89.8% 91.0%
4187163 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.61 46.0 3.77e-01 83.1% 45.2%
4515154 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.61 46.0 3.78e-01 83.1% 45.2%
4057742 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.61 46.0 4.50e-01 83.1% 78.5%
4268790 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.61 45.0 3.60e-01 83.1% 40.0%
4930329 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 40.0 4.27e-01 74.6% 80.0%
5061447 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 45.0 3.52e-01 79.7% 43.1%
4086268 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 45.0 4.00e-01 83.1% 56.7%
3947541 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 41.0 4.39e-01 76.3% 86.0%
5068224 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.60 48.0 2.98e-01 89.8% 40.3%
4994388 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.60 41.0 3.77e-01 79.7% 53.2%
3281927 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 44.0 3.51e-01 83.1% 37.6%
5044594 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.60 50.0 4.48e-01 100.0% 77.8%
4013580 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.60 44.0 3.73e-01 83.1% 68.2%
5017342 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 45.0 3.51e-01 83.1% 39.3%
4311788 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.59 44.0 3.64e-01 83.1% 43.5%
4329624 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.59 44.0 3.75e-01 83.1% 47.6%
4334562 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.59 44.0 3.55e-01 84.7% 39.2%
421 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 41.0 3.86e-01 78.0% 58.4%
5004174 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.58 44.0 3.56e-01 84.7% 45.6%
3580985 220.1.1.162 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.57 48.0 3.57e-01 100.0% 72.0%
1075289 2.4.1.5 beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal 0.57 37.0 3.61e-01 76.3% 59.4%
3903053 220.1.1.162 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.57 47.0 3.53e-01 100.0% 74.7%
3694428 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 42.0 2.55e-01 81.4% 64.0%
3620948 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.66e-01 100.0% 70.5%
5077487 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 42.0 3.30e-01 83.1% 39.3%
5040072 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 45.0 3.27e-01 93.2% 61.1%
3163776 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 41.0 3.31e-01 83.1% 41.5%
4058509 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 45.0 3.59e-01 93.2% 90.8%
3615649 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.49e-01 96.6% 96.4%
3998942 220.1.1.162 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31014 0.55 43.0 3.50e-01 93.2% 86.9%
4039860 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.54 40.0 3.35e-01 83.1% 43.9%
4936051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.20e-01 89.8% 94.5%
4938919 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.05e-01 88.1% 80.0%
5035742 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.29e-01 93.2% 93.3%
4263140 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 40.0 3.82e-01 81.4% 75.7%
3394577 7039.1.1.1 a+b complex topology › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › Helical domain of PCIF1/CAPAM › PCIF1_WW 0.53 39.0 2.71e-01 81.4% 80.9%
4064214 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 37.0 3.68e-01 83.1% 69.2%
3194130 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 43.0 2.69e-01 98.3% 91.6%
4031833 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 39.0 3.96e-01 84.7% 90.0%
3592221 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 44.0 3.59e-01 100.0% 71.2%
3457163 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.51 41.0 3.84e-01 98.3% 71.2%
3425789 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.51 40.0 2.66e-01 94.9% 97.5%
3238997 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.51 38.0 3.02e-01 83.1% 100.0%
3256585 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.31e-01 76.3% 73.8%
3977969 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.50 40.0 3.49e-01 100.0% 93.6%