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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00162
Bact-VirBML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00162
Identity
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 232-295
Domain cluster:
representative
CATH (71)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5fmvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.80 | 65.0 | 5.97e-01 | 100.0% | 67.9% |
| 1bquA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.77 | 66.0 | 5.70e-01 | 100.0% | 61.0% |
| 3r8qA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.77 | 66.0 | 5.84e-01 | 100.0% | 66.3% |
| 4hd5A01 | 2.60.40.3760 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.76 | 67.0 | 5.88e-01 | 100.0% | 70.1% |
| 3l5iA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.76 | 62.0 | 5.68e-01 | 100.0% | 67.0% |
| 1n26A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.76 | 68.0 | 5.74e-01 | 100.0% | 62.6% |
| 4g5aA00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.76 | 62.0 | 5.36e-01 | 100.0% | 57.6% |
| 3r8qA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.76 | 64.0 | 5.81e-01 | 100.0% | 68.5% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.74 | 66.0 | 5.68e-01 | 100.0% | 63.7% |
| 6xaxA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.74 | 63.0 | 5.75e-01 | 100.0% | 71.8% |
| 3cu7A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.74 | 64.0 | 5.47e-01 | 100.0% | 64.2% |
| 3d2fA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.73 | 43.0 | 3.78e-01 | 100.0% | 40.9% |
| 1iarB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.73 | 64.0 | 5.55e-01 | 100.0% | 64.6% |
| 1tdqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.73 | 61.0 | 5.56e-01 | 100.0% | 70.0% |
| 2a74A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.72 | 62.0 | 5.37e-01 | 100.0% | 65.7% |
| 6mfaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.72 | 61.0 | 5.70e-01 | 100.0% | 77.2% |
| 4cvuA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.72 | 61.0 | 5.08e-01 | 98.4% | 63.9% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.72 | 62.0 | 5.45e-01 | 100.0% | 66.3% |
| 4kh9B02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.71 | 63.0 | 5.24e-01 | 100.0% | 61.1% |
| 2cjsA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.71 | 63.0 | 4.78e-01 | 100.0% | 69.3% |
| 2d9qB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 60.0 | 5.34e-01 | 100.0% | 64.9% |
| 2g2nC00 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.70 | 63.0 | 5.21e-01 | 100.0% | 64.3% |
| 3l5iA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 62.0 | 5.59e-01 | 100.0% | 72.7% |
| 4f8lA00 | 2.60.40.3590 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.70 | 63.0 | 4.88e-01 | 100.0% | 68.8% |
| 4npjB01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.70 | 61.0 | 4.78e-01 | 100.0% | 65.7% |
| 1cjyA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.70 | 61.0 | 4.93e-01 | 100.0% | 54.0% |
| 3lb6D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 61.0 | 5.43e-01 | 100.0% | 71.7% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 59.0 | 5.25e-01 | 100.0% | 68.4% |
| 3w57A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.69 | 58.0 | 4.97e-01 | 100.0% | 79.3% |
| 3v6oB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 61.0 | 5.24e-01 | 100.0% | 72.0% |
| 3uh8A00 | 2.60.40.3350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 59.0 | 4.90e-01 | 100.0% | 58.5% |
| 6grqA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 57.0 | 5.11e-01 | 100.0% | 65.7% |
| 4q66A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 55.0 | 4.93e-01 | 100.0% | 63.0% |
| 1a21A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 58.0 | 5.14e-01 | 100.0% | 70.4% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.67 | 39.0 | 3.75e-01 | 100.0% | 47.4% |
| 1fyhB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 58.0 | 5.11e-01 | 100.0% | 66.0% |
| 3qt2A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 54.0 | 4.78e-01 | 100.0% | 59.8% |
| 4ckmB00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.67 | 43.0 | 3.32e-01 | 100.0% | 29.2% |
| 5h4zA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.67 | 56.0 | 4.62e-01 | 100.0% | 58.1% |
| 3og4B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 56.0 | 4.90e-01 | 100.0% | 65.0% |
| 4n6qA00 | 2.60.40.3960 | Mainly Beta › Sandwich › Immunoglobulin-like › Velvet domain | 0.65 | 54.0 | 4.11e-01 | 100.0% | 47.8% |
| 4b9gA00 | 2.60.40.3480 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 57.0 | 4.40e-01 | 100.0% | 74.7% |
| 2dmkA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 57.0 | 4.89e-01 | 100.0% | 68.9% |
| 3uc2A00 | 2.60.40.3340 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 | 0.65 | 58.0 | 4.65e-01 | 100.0% | 51.6% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 40.0 | 3.25e-01 | 100.0% | 33.3% |
| 1cd9B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 55.0 | 4.87e-01 | 100.0% | 67.3% |
| 5yxkA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 56.0 | 4.72e-01 | 100.0% | 72.7% |
| 1l9mA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 56.0 | 4.94e-01 | 100.0% | 66.0% |
| 1etb200 | 2.60.40.180 | Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain | 0.64 | 55.0 | 4.60e-01 | 100.0% | 61.5% |
| 2j73A00 | 2.60.40.1110 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 55.0 | 4.74e-01 | 100.0% | 63.1% |
| 8begA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 54.0 | 4.12e-01 | 100.0% | 73.3% |
| 4l9cA00 | 3.40.1000.30 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › | 0.62 | 47.0 | 3.52e-01 | 82.8% | 34.0% |
| 6gszA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 53.0 | 4.62e-01 | 100.0% | 63.7% |
| 3shsA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 51.0 | 4.29e-01 | 100.0% | 63.4% |
| 1ex0A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 51.0 | 4.62e-01 | 100.0% | 68.4% |
| 1lcsA00 | 3.90.310.10 | Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain | 0.61 | 50.0 | 3.69e-01 | 100.0% | 61.5% |
| 4wiqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 51.0 | 4.43e-01 | 100.0% | 61.3% |
| 1dr9A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 51.0 | 4.45e-01 | 100.0% | 75.2% |
| 3zsjA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 50.0 | 3.97e-01 | 95.3% | 76.8% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 49.0 | 4.38e-01 | 96.9% | 80.4% |
| 3ijfX00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 51.0 | 4.18e-01 | 100.0% | 61.0% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 50.0 | 4.26e-01 | 100.0% | 63.0% |
| 3kspA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 3.16e-01 | 100.0% | 37.2% |
| 2piaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 40.0 | 3.55e-01 | 79.7% | 62.5% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.55 | 47.0 | 3.95e-01 | 96.9% | 56.0% |
| 7sz8A01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.55 | 44.0 | 3.98e-01 | 100.0% | 62.6% |
| 3gveA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.53 | 48.0 | 2.99e-01 | 98.4% | 91.0% |
| 1t6cA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 41.0 | 3.41e-01 | 92.2% | 84.0% |
| 4a2bA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 39.0 | 3.24e-01 | 92.2% | 89.1% |
| 4ojdH01 | 2.60.98.60 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 | 0.51 | 44.0 | 3.23e-01 | 95.3% | 52.4% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.50 | 40.0 | 2.97e-01 | 92.2% | 58.5% |
ECOD (95)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5040203 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.86 | 74.0 | 6.09e-01 | 100.0% | 54.5% |
| 4942527 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.82 | 73.0 | 6.30e-01 | 100.0% | 65.0% |
| 5044524 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.82 | 74.0 | 6.24e-01 | 100.0% | 61.0% |
| 4938060 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.81 | 73.0 | 6.19e-01 | 100.0% | 62.9% |
| 4966255 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.81 | 66.0 | 5.94e-01 | 100.0% | 64.4% |
| 5051722 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.80 | 71.0 | 6.16e-01 | 100.0% | 67.0% |
| 5046078 | 11.1.1.246 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 | 0.80 | 72.0 | 6.20e-01 | 100.0% | 65.0% |
| 4944974 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.78 | 70.0 | 5.92e-01 | 100.0% | 63.8% |
| 5037562 | 11.1.1.31 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 | 0.78 | 66.0 | 5.46e-01 | 100.0% | 53.0% |
| 5079217 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.76 | 66.0 | 5.69e-01 | 100.0% | 61.9% |
| 4994141 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.76 | 68.0 | 5.59e-01 | 100.0% | 56.5% |
| 4995634 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.76 | 64.0 | 5.10e-01 | 100.0% | 46.9% |
| 5052987 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.76 | 66.0 | 5.51e-01 | 96.9% | 56.4% |
| 3719499 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.76 | 68.0 | 5.35e-01 | 100.0% | 77.7% |
| 5070727 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.75 | 66.0 | 5.76e-01 | 100.0% | 66.0% |
| 5029614 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.75 | 66.0 | 5.61e-01 | 100.0% | 60.0% |
| 1220396 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.74 | 66.0 | 5.57e-01 | 100.0% | 60.2% |
| 3928826 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.74 | 66.0 | 4.92e-01 | 100.0% | 45.0% |
| 4963687 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 65.0 | 5.82e-01 | 100.0% | 70.0% |
| 5033012 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 63.0 | 5.60e-01 | 100.0% | 65.3% |
| 3237171 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.74 | 66.0 | 5.51e-01 | 100.0% | 63.6% |
| 3571409 | 11.1.1.54 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 | 0.74 | 66.0 | 5.15e-01 | 100.0% | 51.1% |
| 5029878 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 64.0 | 5.49e-01 | 100.0% | 60.0% |
| 3622155 | 11.1.1.159 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Xylo_C | 0.74 | 66.0 | 5.03e-01 | 100.0% | 84.1% |
| 5032790 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 63.0 | 5.47e-01 | 98.4% | 62.0% |
| 5060437 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 64.0 | 5.66e-01 | 100.0% | 66.3% |
| 4001541 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.73 | 66.0 | 5.25e-01 | 100.0% | 72.8% |
| 3621194 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.73 | 64.0 | 5.12e-01 | 100.0% | 49.2% |
| 3502411 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.73 | 65.0 | 5.52e-01 | 100.0% | 66.7% |
| 4542558 | 105.2.1.71 ↗ | alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › HMMR_N | 0.73 | 62.0 | 4.14e-01 | 100.0% | 23.0% |
| 5014294 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 63.0 | 5.20e-01 | 100.0% | 53.9% |
| 3567698 | 11.1.1.127 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL6Ra-bind | 0.73 | 64.0 | 5.46e-01 | 100.0% | 61.0% |
| 5005784 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 63.0 | 5.26e-01 | 100.0% | 56.4% |
| 1807145 | 11.1.1.102 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD | 0.72 | 62.0 | 5.30e-01 | 100.0% | 61.8% |
| 5070724 | 11.1.1.246 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 | 0.72 | 63.0 | 5.51e-01 | 100.0% | 66.0% |
| 3469342 | 11.1.4.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 | 0.72 | 66.0 | 5.56e-01 | 100.0% | 68.0% |
| 5080418 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 62.0 | 5.39e-01 | 100.0% | 63.0% |
| 4960446 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.72 | 63.0 | 5.40e-01 | 100.0% | 61.0% |
| 5001415 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 62.0 | 5.35e-01 | 100.0% | 62.9% |
| 5043306 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 63.0 | 5.63e-01 | 98.4% | 70.0% |
| 5068207 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 61.0 | 5.43e-01 | 100.0% | 65.3% |
| 3250510 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 61.0 | 5.06e-01 | 100.0% | 53.0% |
| 5034209 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 59.0 | 6.03e-01 | 98.4% | 100.0% |
| 3797683 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 63.0 | 5.05e-01 | 100.0% | 52.8% |
| 3770542 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.71 | 62.0 | 4.87e-01 | 100.0% | 48.6% |
| 3291356 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 62.0 | 5.05e-01 | 100.0% | 61.0% |
| 3317992 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.70 | 62.0 | 4.77e-01 | 100.0% | 46.9% |
| 3795773 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.70 | 61.0 | 4.57e-01 | 100.0% | 39.4% |
| 3692802 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.70 | 61.0 | 4.48e-01 | 100.0% | 58.3% |
| 3799718 | 11.2.1.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 | 0.70 | 61.0 | 4.11e-01 | 100.0% | 26.0% |
| 5034655 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.70 | 60.0 | 5.26e-01 | 100.0% | 64.0% |
| 3868244 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.69 | 60.0 | 5.33e-01 | 100.0% | 67.4% |
| 3757121 | 11.1.1.899 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26141 | 0.69 | 59.0 | 4.99e-01 | 100.0% | 56.9% |
| 3935249 | 11.1.1.955 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_Dep-1_4th | 0.69 | 59.0 | 5.18e-01 | 100.0% | 64.0% |
| 4981079 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 58.0 | 5.17e-01 | 100.0% | 65.3% |
| 3586730 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.69 | 59.0 | 4.64e-01 | 100.0% | 45.5% |
| 3273362 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 59.0 | 5.41e-01 | 100.0% | 72.9% |
| 3571208 | 11.2.1.43 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2+FerI | 0.69 | 60.0 | 4.63e-01 | 100.0% | 70.7% |
| 3934568 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.68 | 59.0 | 4.96e-01 | 96.9% | 61.8% |
| 5015034 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 58.0 | 5.14e-01 | 100.0% | 64.0% |
| 3230966 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.68 | 61.0 | 5.15e-01 | 100.0% | 66.7% |
| 5061425 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 59.0 | 5.67e-01 | 100.0% | 85.3% |
| 3798471 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 59.0 | 5.07e-01 | 100.0% | 62.9% |
| 3251655 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 57.0 | 5.31e-01 | 98.4% | 75.0% |
| 3403086 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 58.0 | 5.03e-01 | 100.0% | 62.0% |
| 3275969 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 58.0 | 5.01e-01 | 100.0% | 61.0% |
| 5027294 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 59.0 | 5.23e-01 | 100.0% | 67.4% |
| 5041274 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 57.0 | 5.56e-01 | 100.0% | 85.7% |
| 3408695 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.67 | 51.0 | 4.47e-01 | 100.0% | 54.7% |
| 3259959 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 58.0 | 5.10e-01 | 100.0% | 69.0% |
| 4937354 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.67 | 55.0 | 5.67e-01 | 95.3% | 100.0% |
| 5018861 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 58.0 | 4.98e-01 | 100.0% | 62.9% |
| 5068540 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 57.0 | 5.02e-01 | 100.0% | 65.0% |
| 3938246 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 55.0 | 5.16e-01 | 100.0% | 75.0% |
| 4946759 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 57.0 | 5.08e-01 | 100.0% | 74.7% |
| 3913065 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.65 | 55.0 | 4.45e-01 | 100.0% | 71.1% |
| 1146564 | 11.1.1.183 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4426 | 0.65 | 58.0 | 4.70e-01 | 100.0% | 53.3% |
| 3628430 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.65 | 56.0 | 4.84e-01 | 100.0% | 61.0% |
| 3226172 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 55.0 | 4.77e-01 | 100.0% | 61.9% |
| 4856576 | 11.1.4.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Transthyretin | 0.65 | 56.0 | 4.69e-01 | 100.0% | 63.7% |
| 5028185 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 55.0 | 5.19e-01 | 98.4% | 81.2% |
| 4960359 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.64 | 55.0 | 4.22e-01 | 100.0% | 75.0% |
| 4869632 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.64 | 55.0 | 4.77e-01 | 100.0% | 96.2% |
| 3546859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 55.0 | 4.47e-01 | 100.0% | 72.3% |
| 3224238 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.64 | 55.0 | 4.72e-01 | 100.0% | 58.2% |
| 3931050 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.64 | 53.0 | 4.60e-01 | 100.0% | 64.5% |
| 3216448 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.63 | 53.0 | 4.67e-01 | 100.0% | 62.0% |
| 3966288 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 55.0 | 4.59e-01 | 100.0% | 55.7% |
| 3995218 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.62 | 52.0 | 4.65e-01 | 100.0% | 64.0% |
| 3962499 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 54.0 | 5.17e-01 | 100.0% | 94.7% |
| 3454563 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.62 | 53.0 | 4.99e-01 | 100.0% | 78.8% |
| 2036580 | 11.1.1.344 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_56 | 0.59 | 48.0 | 4.49e-01 | 98.4% | 72.9% |
| 3966494 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.57 | 49.0 | 4.13e-01 | 96.9% | 56.4% |
| 4606231 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.56 | 45.0 | 4.02e-01 | 96.9% | 62.4% |
| 3470047 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.50 | 40.0 | 3.61e-01 | 84.4% | 64.7% |
D2
high
residues 333-400
D3
medium
residues 1-64_150-174
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zppA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.59 | 52.0 | 3.39e-01 | 100.0% | 48.5% |
| 7dmkA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.58 | 51.0 | 3.58e-01 | 100.0% | 96.3% |
| 2xtwD00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.57 | 49.0 | 3.82e-01 | 98.9% | 51.0% |
| 3nzeA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 46.0 | 3.39e-01 | 95.5% | 75.4% |
| 4eexA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 38.0 | 3.34e-01 | 73.0% | 74.3% |
| 5fbtA03 | 3.50.30.10 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain | 0.54 | 38.0 | 3.65e-01 | 88.8% | 63.4% |
| 4yhbA02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.52 | 36.0 | 3.27e-01 | 73.0% | 93.9% |
| 3p0rA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.52 | 43.0 | 3.40e-01 | 96.6% | 88.4% |
| 3hv8A00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.52 | 42.0 | 3.21e-01 | 94.4% | 54.1% |
| 6d2xA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 40.0 | 2.82e-01 | 86.5% | 48.6% |
| 5yrpA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.51 | 41.0 | 3.23e-01 | 94.4% | 53.1% |
| 4c9vA00 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.51 | 39.0 | 3.54e-01 | 93.3% | 60.0% |
| 1k20A01 | 3.90.1640.10 | Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) | 0.50 | 41.0 | 3.28e-01 | 91.0% | 61.1% |
| 3gk7A01 | 3.40.1080.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase | 0.50 | 43.0 | 3.46e-01 | 96.6% | 46.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3699802 | 207.2.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.66 | 60.0 | 3.73e-01 | 100.0% | 29.5% |
| 4025775 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.63 | 54.0 | 4.97e-01 | 98.9% | 72.2% |
| 3461265 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.61 | 55.0 | 4.17e-01 | 100.0% | 51.4% |
| 3296023 | 207.1.1.135 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRRNT_2, LRR_14 | 0.61 | 50.0 | 3.31e-01 | 95.5% | 20.7% |
| 3465028 | 207.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 | 0.60 | 50.0 | 4.08e-01 | 100.0% | 48.0% |
| 4983794 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.60 | 54.0 | 3.48e-01 | 100.0% | 61.5% |
| 4884477 | 207.2.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectinesterase | 0.59 | 52.0 | 4.09e-01 | 100.0% | 67.3% |
| 3329833 | 207.1.1.67 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6 | 0.59 | 50.0 | 3.41e-01 | 100.0% | 24.2% |
| 3361323 | 207.1.1.60 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_8 | 0.59 | 49.0 | 3.54e-01 | 95.5% | 31.1% |
| 3247943 | 2006.1.6.40 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF7788 | 0.59 | 46.0 | 3.69e-01 | 86.5% | 87.0% |
| 4069065 | 207.9.1.4 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Involucrin | 0.57 | 50.0 | 4.29e-01 | 100.0% | 68.0% |
| 3679319 | 207.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 | 0.57 | 49.0 | 3.84e-01 | 100.0% | 45.2% |
| 4996222 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.56 | 47.0 | 3.92e-01 | 93.3% | 71.2% |
| 3329763 | 207.1.1.133 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_14 | 0.56 | 48.0 | 3.37e-01 | 100.0% | 41.2% |
| 5032165 | 3979.1.1.0 ↗ | a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain | 0.55 | 37.0 | 3.99e-01 | 70.8% | 100.0% |
| 2485691 | 207.2.2.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin › GP38 | 0.54 | 38.0 | 4.15e-01 | 73.0% | 100.0% |
| 4461157 | 1160.1.1.1 ↗ | beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › TGFBR3_N | 0.53 | 42.0 | 3.54e-01 | 93.3% | 48.8% |
D4
medium
residues 68-146
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xe1A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.73 | 58.0 | 5.60e-01 | 86.1% | 75.8% |
| 4b43A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.73 | 56.0 | 4.99e-01 | 84.8% | 57.4% |
| 2hcjB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.73 | 57.0 | 5.40e-01 | 84.8% | 76.6% |
| 3e1yE01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.71 | 55.0 | 5.43e-01 | 84.8% | 81.4% |
| 1zunB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.70 | 55.0 | 5.32e-01 | 86.1% | 76.7% |
| 2crvA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.66 | 52.0 | 4.94e-01 | 86.1% | 77.4% |
| 1b23P03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.66 | 56.0 | 5.35e-01 | 98.7% | 96.8% |
| 2derA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.65 | 58.0 | 5.65e-01 | 100.0% | 94.3% |
| 3lq6A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.65 | 50.0 | 4.48e-01 | 84.8% | 81.6% |
| 3ttgA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.63 | 50.0 | 3.33e-01 | 100.0% | 20.8% |
| 1pkhB00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.54 | 39.0 | 3.11e-01 | 78.5% | 67.4% |
| 3zx7A01 | 2.60.120.980 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 36.0 | 2.90e-01 | 70.9% | 96.2% |
| 1arbA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 39.0 | 3.36e-01 | 83.5% | 61.3% |
| 4eaeA00 | 2.60.40.4170 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.33e-01 | 94.9% | 92.4% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.51 | 44.0 | 3.76e-01 | 100.0% | 60.0% |
| 2wfpA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 37.0 | 3.49e-01 | 89.9% | 63.3% |
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 36.0 | 3.93e-01 | 74.7% | 98.4% |
| 7sqxA02 | 3.30.70.2150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 3.47e-01 | 78.5% | 95.9% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3712655 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.76 | 60.0 | 5.03e-01 | 84.8% | 50.8% |
| 4525954 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 59.0 | 5.44e-01 | 84.8% | 74.0% |
| 3506820 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.74 | 58.0 | 4.89e-01 | 84.8% | 50.4% |
| 4397164 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.74 | 58.0 | 4.87e-01 | 84.8% | 50.8% |
| 4138633 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.74 | 57.0 | 5.12e-01 | 84.8% | 60.0% |
| 140 | 1.1.7.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D4 | 0.73 | 58.0 | 5.60e-01 | 86.1% | 75.8% |
| 3275318 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.73 | 57.0 | 4.74e-01 | 84.8% | 47.9% |
| 4029842 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.73 | 57.0 | 5.06e-01 | 84.8% | 59.1% |
| 3700677 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 58.0 | 5.30e-01 | 86.1% | 67.6% |
| 5058339 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.73 | 57.0 | 5.40e-01 | 84.8% | 72.6% |
| 4204869 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.73 | 56.0 | 5.15e-01 | 84.8% | 62.9% |
| 4166205 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.73 | 56.0 | 5.06e-01 | 84.8% | 60.0% |
| 3966468 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 57.0 | 5.38e-01 | 84.8% | 75.8% |
| 4108950 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.73 | 56.0 | 5.40e-01 | 84.8% | 73.3% |
| 3476360 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.73 | 57.0 | 5.11e-01 | 84.8% | 62.7% |
| 3268226 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.72 | 57.0 | 5.18e-01 | 84.8% | 67.6% |
| 3749808 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.72 | 57.0 | 5.23e-01 | 86.1% | 67.6% |
| 3199061 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.72 | 56.0 | 4.81e-01 | 84.8% | 52.8% |
| 4432688 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.72 | 55.0 | 4.86e-01 | 84.8% | 55.0% |
| 3786548 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 57.0 | 5.40e-01 | 86.1% | 80.0% |
| 4203595 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.72 | 55.0 | 4.73e-01 | 84.8% | 50.8% |
| 4027927 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.72 | 57.0 | 5.38e-01 | 86.1% | 76.8% |
| 4382801 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.72 | 55.0 | 4.56e-01 | 84.8% | 45.5% |
| 4233747 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.72 | 57.0 | 5.37e-01 | 86.1% | 76.8% |
| 3229260 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.71 | 55.0 | 5.33e-01 | 83.5% | 76.7% |
| 5058285 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.71 | 56.0 | 5.44e-01 | 86.1% | 76.7% |
| 4655249 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.71 | 55.0 | 4.63e-01 | 84.8% | 48.9% |
| 4664583 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.71 | 55.0 | 4.62e-01 | 84.8% | 48.9% |
| 4886574 | 2004.1.1.923 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › EF-G_D2 | 0.71 | 55.0 | 4.74e-01 | 84.8% | 52.8% |
| 4619296 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.71 | 55.0 | 4.74e-01 | 84.8% | 52.8% |
| 3667743 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.71 | 54.0 | 4.66e-01 | 84.8% | 50.8% |
| 4943568 | 1.1.7.147 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP-eEF1A_C | 0.71 | 58.0 | 5.45e-01 | 88.6% | 76.8% |
| 3483799 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.71 | 58.0 | 5.09e-01 | 88.6% | 63.5% |
| 3962338 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 54.0 | 4.59e-01 | 84.8% | 48.9% |
| 4514773 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.71 | 55.0 | 5.13e-01 | 84.8% | 68.0% |
| 3178567 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 55.0 | 5.13e-01 | 84.8% | 74.0% |
| 4343364 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.70 | 54.0 | 4.52e-01 | 84.8% | 47.1% |
| 4132631 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.70 | 55.0 | 5.31e-01 | 84.8% | 80.0% |
| 4584441 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 56.0 | 5.11e-01 | 86.1% | 69.9% |
| 2723599 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 55.0 | 4.75e-01 | 84.8% | 70.5% |
| 3962889 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 53.0 | 4.97e-01 | 83.5% | 67.0% |
| 4438537 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.69 | 55.0 | 5.28e-01 | 86.1% | 76.7% |
| 3289382 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 54.0 | 4.99e-01 | 86.1% | 65.7% |
| 4934153 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.69 | 52.0 | 4.93e-01 | 84.8% | 67.4% |
| 1166956 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.68 | 55.0 | 5.19e-01 | 88.6% | 72.4% |
| 3628576 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.68 | 53.0 | 5.15e-01 | 86.1% | 77.8% |
| 4061072 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.67 | 47.0 | 4.11e-01 | 74.7% | 54.4% |
| 3407712 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.66 | 58.0 | 5.47e-01 | 100.0% | 89.8% |
| 3604862 | 7526.1.1.2 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › EF-G_D2 | 0.66 | 60.0 | 4.21e-01 | 100.0% | 66.3% |
| 3586640 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.66 | 59.0 | 4.00e-01 | 100.0% | 63.9% |
| 3991400 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.65 | 58.0 | 4.05e-01 | 100.0% | 70.4% |
| 5083379 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.65 | 56.0 | 5.44e-01 | 97.5% | 96.6% |
| 4129006 | 1.1.8.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 | 0.65 | 56.0 | 5.38e-01 | 100.0% | 94.7% |
| 3966451 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.65 | 55.0 | 5.28e-01 | 97.5% | 93.7% |
| 3849755 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.64 | 57.0 | 3.52e-01 | 100.0% | 40.2% |
| 4402448 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 49.0 | 4.31e-01 | 86.1% | 55.0% |
| 5022644 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 47.0 | 4.47e-01 | 88.6% | 66.3% |
| 4657200 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.64 | 56.0 | 3.48e-01 | 100.0% | 30.2% |
| 4048432 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.63 | 56.0 | 4.04e-01 | 100.0% | 65.2% |
| None | — | 0.63 | 56.0 | 4.04e-01 | 100.0% | 64.3% | |
| None | — | 0.63 | 55.0 | 3.52e-01 | 100.0% | 35.9% | |
| 5057186 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 49.0 | 4.71e-01 | 84.8% | 83.3% |
| 3196006 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 47.0 | 3.91e-01 | 84.8% | 77.9% |
| 3822839 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.61 | 48.0 | 4.77e-01 | 100.0% | 83.5% |
| 4931822 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 39.0 | 4.21e-01 | 74.7% | 84.6% |
| 4999960 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 48.0 | 4.37e-01 | 94.9% | 87.3% |
| 3577090 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.52 | 39.0 | 3.96e-01 | 83.5% | 81.2% |
| 4077367 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.52 | 38.0 | 4.12e-01 | 77.2% | 98.5% |
| 1178765 | 10.11.1.2 ↗ | beta sandwiches › jelly-roll › Thiamin pyrophosphokinase, substrate-binding domain › Thiamin pyrophosphokinase, substrate-binding domain › Thi_PPkinase_C | 0.51 | 35.0 | 3.60e-01 | 97.5% | 77.8% |
| 4030879 | 11.4.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 | 0.51 | 43.0 | 3.62e-01 | 97.5% | 69.7% |
| 1211011 | 11.4.1.4 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF5068 | 0.51 | 42.0 | 3.30e-01 | 94.9% | 92.0% |