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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00166
Bact-VirBML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00166
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-112
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kqzA01 | 1.10.2020.20 | Mainly Alpha › Orthogonal Bundle › uronate isomerase, domain 2, chain A › | 0.67 | 53.0 | 4.64e-01 | 98.8% | 56.3% |
| 2rq5A00 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.56 | 42.0 | 3.75e-01 | 81.5% | 83.5% |
| 2dofA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.56 | 32.0 | 3.15e-01 | 90.1% | 51.8% |
| 3cexA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 46.0 | 3.70e-01 | 100.0% | 79.4% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.53 | 35.0 | 3.54e-01 | 84.0% | 67.9% |
| 3h0dB02 | 1.10.1200.150 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain | 0.52 | 36.0 | 3.69e-01 | 74.1% | 87.7% |
| 2n1fA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.50 | 41.0 | 4.04e-01 | 96.3% | 89.9% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3723084 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.67 | 35.0 | 3.74e-01 | 92.6% | 58.6% |
| 3439489 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.60 | 32.0 | 3.11e-01 | 92.6% | 46.7% |
| 4291138 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.58 | 41.0 | 3.56e-01 | 90.1% | 48.0% |
| 3785967 | 2485.1.1.49 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 | 0.58 | 42.0 | 3.23e-01 | 79.0% | 36.5% |
| 3647713 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.57 | 39.0 | 3.09e-01 | 72.8% | 62.7% |
| 5014208 | 192.29.1.302 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF998 | 0.54 | 41.0 | 3.26e-01 | 84.0% | 97.8% |
| 4110761 | 306.7.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N | 0.53 | 39.0 | 3.44e-01 | 90.1% | 52.5% |
| 3434621 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.52 | 46.0 | 3.21e-01 | 100.0% | 72.5% |
| 3786301 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.52 | 40.0 | 3.91e-01 | 87.7% | 75.8% |
| 5039312 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.51 | 40.0 | 4.08e-01 | 92.6% | 88.7% |
| 3527369 | 110.1.1.3 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain › DED | 0.51 | 39.0 | 3.84e-01 | 98.8% | 76.7% |
D2
high
residues 118-234
Domain cluster:
rep: 04302015_21_scaffold_6_prodigal-single.1__X__X__00055__D113-228