Back to structures

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00181

Bact-Vir

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00181

Identity

Kingdom:
phage

Quality

92.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.73 43.0 4.88e-01 86.2% 79.1%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.68 46.0 5.06e-01 91.4% 93.2%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.67 45.0 3.61e-01 75.9% 35.0%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.65 41.0 4.01e-01 72.4% 56.1%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.63 40.0 3.43e-01 86.2% 38.9%
7pupA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 55.0 3.71e-01 100.0% 51.2%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 43.0 3.65e-01 75.9% 97.1%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.61 44.0 3.63e-01 77.6% 98.2%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 44.0 3.61e-01 86.2% 67.5%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.04e-01 100.0% 37.3%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 3.14e-01 93.1% 36.4%
3qo6A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 44.0 3.79e-01 86.2% 94.1%
3s24A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 39.0 3.37e-01 70.7% 42.6%
6bm0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 49.0 3.05e-01 98.3% 27.3%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 50.0 3.14e-01 98.3% 19.7%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 48.0 3.14e-01 100.0% 34.9%
3hrgA01 3.30.420.250 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, N-terminal domain 0.57 48.0 3.73e-01 100.0% 90.2%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 35.0 3.58e-01 72.4% 62.7%
3tw6C01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 48.0 2.87e-01 100.0% 21.8%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 45.0 2.84e-01 91.4% 28.7%
5i47B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 48.0 4.11e-01 98.3% 80.0%
3p3yA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.65e-01 87.9% 67.0%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 40.0 2.64e-01 79.3% 28.5%
3wxmB02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.55 41.0 3.38e-01 93.1% 41.0%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.17e-01 93.1% 65.2%
1bprA00 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.55 40.0 2.94e-01 81.0% 46.8%
3er0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 4.13e-01 89.7% 98.6%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.65e-01 89.7% 99.0%
1i99I02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.16e-01 79.3% 59.8%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 45.0 2.99e-01 100.0% 28.3%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.53 38.0 3.20e-01 81.0% 70.9%
7x36A01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 41.0 2.62e-01 89.7% 92.6%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 45.0 3.00e-01 100.0% 29.9%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.52 40.0 3.16e-01 89.7% 80.1%
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 39.0 3.52e-01 89.7% 91.5%
3hslX00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 43.0 2.85e-01 100.0% 32.4%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.32e-01 91.4% 94.2%
1sjiA03 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 39.0 3.18e-01 87.9% 79.8%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 43.0 2.63e-01 100.0% 62.5%
1yemB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 42.0 3.17e-01 100.0% 54.2%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 42.0 2.72e-01 98.3% 91.9%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.51 40.0 3.10e-01 100.0% 61.5%
2c9kA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.51 42.0 3.03e-01 100.0% 43.6%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.56e-01 91.4% 26.9%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 42.0 3.43e-01 100.0% 59.7%
4gniA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 3.52e-01 89.7% 63.2%
3db2B02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 37.0 2.61e-01 81.0% 76.8%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3712993 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 54.0 4.95e-01 100.0% 66.7%
4021315 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 53.0 3.32e-01 91.4% 30.9%
3704808 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.65 46.0 2.67e-01 74.1% 20.4%
5061842 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.64 57.0 4.02e-01 100.0% 47.4%
3384826 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.64 54.0 3.31e-01 93.1% 28.0%
3252371 206.1.3.16 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin 0.64 56.0 3.79e-01 100.0% 49.5%
4995755 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 45.0 4.91e-01 93.1% 100.0%
3760926 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.63 44.0 3.41e-01 75.9% 85.6%
3494479 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.62 51.0 3.06e-01 91.4% 19.8%
3796107 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.62 42.0 3.70e-01 87.9% 45.6%
3933750 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 48.0 3.90e-01 86.2% 99.1%
3744704 5.1.4.173 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR75_2nd 0.62 51.0 3.11e-01 91.4% 19.2%
3724738 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.61 46.0 2.89e-01 79.3% 21.3%
3349450 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.61 44.0 3.47e-01 75.9% 36.7%
4221590 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.61 53.0 3.44e-01 100.0% 56.2%
4255354 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.61 50.0 3.00e-01 91.4% 24.9%
3410461 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 52.0 3.23e-01 98.3% 31.0%
3342083 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 52.0 3.25e-01 98.3% 18.6%
3248985 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 50.0 3.90e-01 93.1% 83.1%
4055868 206.1.3.19 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C 0.60 52.0 3.44e-01 100.0% 42.3%
4019290 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.60 43.0 3.38e-01 75.9% 36.7%
3461718 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 53.0 3.54e-01 100.0% 37.8%
3517106 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 3.11e-01 93.1% 19.1%
3737433 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.60 52.0 3.41e-01 100.0% 36.1%
4969674 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.20e-01 98.3% 25.6%
3177460 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.59 49.0 4.25e-01 100.0% 60.0%
3464402 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 36.0 3.55e-01 75.9% 55.4%
3498949 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.09e-01 100.0% 41.5%
2832995 274.1.1.13 a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.59 50.0 3.97e-01 98.3% 72.0%
4927673 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 40.0 3.67e-01 72.4% 56.2%
3939365 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.59 46.0 3.66e-01 100.0% 40.8%
4022544 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 50.0 2.98e-01 94.8% 15.5%
3868894 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 51.0 3.09e-01 100.0% 100.0%
3842596 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.06e-01 100.0% 97.2%
3427908 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 39.0 3.33e-01 70.7% 44.2%
1144831 2484.1.1.63 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3822 0.57 48.0 3.64e-01 100.0% 82.7%
4998658 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.56 42.0 3.73e-01 98.3% 53.3%
3733469 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.56 45.0 3.37e-01 87.9% 37.9%
3665166 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 48.0 3.06e-01 98.3% 26.7%
3207612 206.1.3.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 0.56 46.0 3.30e-01 100.0% 28.9%
3965860 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.55 37.0 3.12e-01 82.8% 40.0%
3259296 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 36.0 2.73e-01 70.7% 26.0%
3845022 5.1.11.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.55 43.0 2.51e-01 89.7% 10.3%
3314271 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.55 37.0 2.85e-01 89.7% 29.6%
3596304 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 44.0 4.01e-01 93.1% 65.0%
3329674 708.1.2.12 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › At4g08330 0.54 40.0 3.28e-01 94.8% 40.0%
4522783 101.1.2.715 alpha arrays › HTH › HTH › winged helix domain › CheF-arch 0.54 46.0 3.00e-01 100.0% 63.2%
4029094 3257.1.1.0 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain 0.54 37.0 2.66e-01 91.4% 22.0%
3256584 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 39.0 3.54e-01 79.3% 65.0%
3699623 2.1.1.43 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.53 45.0 3.78e-01 98.3% 91.4%
4999054 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 34.0 2.61e-01 70.7% 23.0%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 46.0 3.55e-01 100.0% 59.3%
5005393 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 43.0 3.32e-01 100.0% 65.4%
4122019 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.52 46.0 3.68e-01 100.0% 57.4%
2834340 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.52 43.0 3.40e-01 100.0% 64.0%
3806681 5.1.5.96 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.52 40.0 2.70e-01 98.3% 19.3%
5051538 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.51 44.0 2.84e-01 94.8% 85.5%
5018095 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.34e-01 94.8% 81.7%
3478975 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 44.0 3.41e-01 100.0% 56.3%
4943404 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 42.0 3.37e-01 100.0% 57.7%
4932517 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.50 37.0 3.34e-01 87.9% 54.4%