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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00220
Bact-VirBML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00220
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-99
Domain cluster:
rep: IMGVR_UViG_3300031933_000299-3300031933-Ga0326349_100026814__D58-120
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 52.0 | 3.78e-01 | 96.6% | 86.7% |
| 3vskA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.59 | 50.0 | 3.45e-01 | 100.0% | 88.8% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.57 | 46.0 | 3.96e-01 | 97.7% | 55.0% |
| 1odhA01 | 2.20.25.670 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain | 0.57 | 40.0 | 4.34e-01 | 93.2% | 90.1% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.56 | 45.0 | 3.74e-01 | 88.6% | 65.1% |
| 2x8fA02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.56 | 43.0 | 4.23e-01 | 83.0% | 80.0% |
| 1mwsA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 49.0 | 3.38e-01 | 100.0% | 87.3% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.56 | 50.0 | 3.87e-01 | 98.9% | 77.0% |
| 4kcaA03 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 42.0 | 4.11e-01 | 81.8% | 76.3% |
| 6xrbA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.55 | 49.0 | 4.23e-01 | 100.0% | 69.8% |
| 1e50B00 | 2.40.250.10 | Mainly Beta › Beta Barrel › Polyomavirus Enhancer Binding Protein 2; Chain: A; › Core binding factor, beta subunit | 0.55 | 45.0 | 4.06e-01 | 93.2% | 78.5% |
| 8hmcA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 46.0 | 3.20e-01 | 95.5% | 100.0% |
| 1nqnA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.54 | 41.0 | 3.77e-01 | 81.8% | 91.5% |
| 5a67A00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.54 | 49.0 | 3.69e-01 | 100.0% | 79.6% |
| 1kyfA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.54 | 44.0 | 4.12e-01 | 100.0% | 72.6% |
| 3bcyA00 | 3.40.1000.40 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 | 0.54 | 46.0 | 3.94e-01 | 96.6% | 75.3% |
| 1h91A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 45.0 | 3.62e-01 | 95.5% | 88.3% |
| 2zfdB00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.53 | 43.0 | 3.92e-01 | 100.0% | 66.4% |
| 2xklA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 43.0 | 3.59e-01 | 97.7% | 51.7% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.53 | 38.0 | 3.22e-01 | 78.4% | 73.2% |
| 2cy5A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 43.0 | 3.89e-01 | 93.2% | 66.7% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 45.0 | 3.73e-01 | 100.0% | 75.0% |
| 2l5pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 46.0 | 3.71e-01 | 100.0% | 69.7% |
| 3wjcA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 42.0 | 3.61e-01 | 92.0% | 75.2% |
| 4ewfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 45.0 | 3.29e-01 | 100.0% | 84.3% |
| 1vprA03 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 41.0 | 3.45e-01 | 87.5% | 90.4% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 38.0 | 3.72e-01 | 78.4% | 79.6% |
| 3hwuA00 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.51 | 38.0 | 3.22e-01 | 77.3% | 67.4% |
| 2zylA02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.51 | 44.0 | 3.34e-01 | 96.6% | 54.8% |
| 1dfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 43.0 | 3.51e-01 | 94.3% | 69.9% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 41.0 | 3.94e-01 | 89.8% | 76.5% |
| 4ge1C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 41.0 | 3.27e-01 | 89.8% | 58.5% |
| 3ua3A03 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.51 | 38.0 | 3.02e-01 | 81.8% | 73.4% |
| 4kc7A02 | 2.40.128.10 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 39.0 | 3.83e-01 | 84.1% | 82.8% |
| 2kieA00 | 2.30.29.110 | Mainly Beta › Roll › PH-domain like › | 0.51 | 35.0 | 3.19e-01 | 81.8% | 50.8% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.51 | 41.0 | 3.60e-01 | 89.8% | 66.2% |
| 2j7vB01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 44.0 | 3.24e-01 | 100.0% | 85.1% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.51 | 41.0 | 3.95e-01 | 90.9% | 88.2% |
| 6nhsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 43.0 | 3.29e-01 | 100.0% | 87.0% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 43.0 | 3.74e-01 | 100.0% | 84.8% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 37.0 | 3.11e-01 | 78.4% | 68.8% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.50 | 39.0 | 3.12e-01 | 84.1% | 52.7% |
| 3le2A02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.50 | 40.0 | 3.50e-01 | 86.4% | 79.4% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3216991 | 331.15.1.0 ↗ | a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 | 0.71 | 48.0 | 4.84e-01 | 96.6% | 68.9% |
| 3846916 | 331.9.1.8 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP3B1_C_2 | 0.60 | 49.0 | 4.51e-01 | 100.0% | 67.8% |
| 3643787 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.59 | 45.0 | 3.00e-01 | 80.7% | 29.6% |
| 3702063 | 331.9.1.5 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › AP4E_app_platf | 0.59 | 46.0 | 4.31e-01 | 100.0% | 67.9% |
| 4023931 | 331.1.1.1 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP | 0.58 | 40.0 | 4.05e-01 | 98.9% | 71.1% |
| 3438388 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.57 | 46.0 | 4.03e-01 | 100.0% | 57.8% |
| 5040016 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.57 | 49.0 | 4.08e-01 | 96.6% | 73.5% |
| 3615838 | 517.1.1.1 ↗ | beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta | 0.56 | 46.0 | 4.08e-01 | 93.2% | 68.1% |
| 5055280 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.56 | 50.0 | 4.24e-01 | 98.9% | 64.1% |
| 2032855 | 9.28.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C | 0.56 | 44.0 | 4.24e-01 | 86.4% | 82.2% |
| 160441 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.56 | 50.0 | 3.87e-01 | 98.9% | 77.0% |
| 2717340 | 881.1.1.4 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DcrB | 0.55 | 49.0 | 4.13e-01 | 100.0% | 64.7% |
| 3195743 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 44.0 | 3.42e-01 | 93.2% | 81.3% |
| 3726450 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 44.0 | 3.62e-01 | 92.0% | 70.0% |
| 5038083 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.54 | 45.0 | 4.05e-01 | 100.0% | 66.1% |
| 2126755 | 9.28.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C | 0.54 | 42.0 | 3.88e-01 | 85.2% | 71.6% |
| 3781646 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.54 | 48.0 | 3.43e-01 | 100.0% | 45.0% |
| 3421782 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.54 | 39.0 | 2.81e-01 | 76.1% | 82.8% |
| 3291389 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 47.0 | 3.96e-01 | 100.0% | 73.5% |
| 4430862 | 9.28.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Barrel domain in extracellular arabinanase › Barrel domain in extracellular arabinanase › GH43_C | 0.53 | 42.0 | 4.00e-01 | 86.4% | 81.9% |
| 4178260 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.53 | 41.0 | 4.21e-01 | 90.9% | 89.4% |
| 4101946 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.53 | 45.0 | 3.74e-01 | 96.6% | 71.5% |
| 4009799 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.53 | 36.0 | 3.41e-01 | 100.0% | 59.0% |
| 142989 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.52 | 46.0 | 3.71e-01 | 100.0% | 69.7% |
| 4451493 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.52 | 44.0 | 3.62e-01 | 96.6% | 90.7% |
| 3169357 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.52 | 43.0 | 4.06e-01 | 100.0% | 73.6% |
| 3601320 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.52 | 42.0 | 4.08e-01 | 96.6% | 80.0% |
| 3269422 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 45.0 | 3.25e-01 | 100.0% | 40.7% |
| 4928436 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 45.0 | 3.87e-01 | 100.0% | 82.1% |
| 3785320 | 9.14.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 | 0.51 | 42.0 | 3.52e-01 | 92.0% | 82.5% |
| 4875038 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.51 | 40.0 | 3.48e-01 | 88.6% | 63.3% |
| 2537367 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.51 | 42.0 | 3.41e-01 | 94.3% | 64.7% |
| 3897308 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.51 | 46.0 | 3.73e-01 | 98.9% | 64.0% |
| 4021640 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.51 | 38.0 | 3.19e-01 | 80.7% | 89.4% |
| 3597443 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 45.0 | 3.82e-01 | 100.0% | 80.7% |
| 5009499 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.51 | 42.0 | 3.71e-01 | 93.2% | 77.8% |
| 3597310 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 40.0 | 3.65e-01 | 90.9% | 68.5% |
| 3268196 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.50 | 43.0 | 3.67e-01 | 96.6% | 74.7% |
| 3632911 | 243.3.1.49 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Saf4_Yju2 | 0.50 | 38.0 | 3.86e-01 | 79.5% | 82.4% |
| 3875866 | 9.1.1.11 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 | 0.50 | 43.0 | 3.51e-01 | 96.6% | 91.8% |
| 5058112 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.50 | 43.0 | 3.74e-01 | 100.0% | 76.4% |
| 3939474 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.50 | 40.0 | 3.55e-01 | 93.2% | 80.7% |
| 3763936 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.50 | 41.0 | 3.49e-01 | 94.3% | 79.4% |
| 4047090 | 222.1.1.24 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA | 0.50 | 38.0 | 3.38e-01 | 85.2% | 85.7% |