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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00221

Bact-Vir

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00221

Identity

Kingdom:
phage

Quality

85.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-76
PDB
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 59.0 5.94e-01 84.8% 75.4%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 59.0 6.59e-01 81.8% 100.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 5.57e-01 80.3% 79.7%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 62.0 5.37e-01 90.9% 58.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 58.0 5.71e-01 84.8% 79.2%
2d9uA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 48.0 4.61e-01 71.2% 59.5%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.74 58.0 4.46e-01 84.8% 53.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.60e-01 87.9% 76.3%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 4.67e-01 92.4% 45.1%
1uuzB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.66 48.0 3.91e-01 78.8% 58.6%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 3.90e-01 83.3% 60.9%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.19e-01 83.3% 63.5%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.87e-01 83.3% 98.1%
5vqjA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.63 43.0 2.99e-01 71.2% 22.7%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 44.0 3.50e-01 75.8% 87.2%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 46.0 3.99e-01 83.3% 52.9%
6lbtA01 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 3.41e-01 77.3% 77.5%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.59 47.0 4.55e-01 89.4% 81.3%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.26e-01 83.3% 73.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.50e-01 84.8% 79.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.19e-01 83.3% 67.5%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.59 42.0 3.68e-01 77.3% 67.3%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 40.0 3.80e-01 72.7% 95.1%
1k4nA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 38.0 2.84e-01 71.2% 51.9%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 45.0 3.10e-01 93.9% 69.6%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.56 44.0 3.04e-01 87.9% 91.8%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 43.0 4.26e-01 86.4% 82.9%
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 40.0 2.47e-01 78.8% 28.6%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.55 42.0 3.11e-01 86.4% 30.9%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 4.17e-01 83.3% 87.9%
2bisA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 42.0 2.99e-01 90.9% 62.2%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.35e-01 74.2% 67.6%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.33e-01 77.3% 95.4%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.53 38.0 2.75e-01 75.8% 62.9%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 2.84e-01 78.8% 67.5%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.52e-01 80.3% 68.8%
2shpB03 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 42.0 2.83e-01 92.4% 54.0%
6z30A02 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.52 42.0 3.46e-01 95.5% 75.7%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 3.45e-01 81.8% 89.6%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.68e-01 77.3% 85.3%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026958 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 60.0 6.50e-01 83.3% 89.1%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.81 59.0 4.66e-01 83.3% 39.2%
3510786 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.80 60.0 6.07e-01 84.8% 80.0%
1567496 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.80 59.0 6.34e-01 84.8% 91.2%
3622139 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 58.0 5.23e-01 86.4% 58.9%
4565837 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.74 55.0 4.87e-01 83.3% 54.7%
5066224 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.74 55.0 4.95e-01 84.8% 57.8%
4937389 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.74 55.0 4.60e-01 83.3% 47.3%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.74 58.0 5.40e-01 83.3% 73.8%
3848399 4.8.1.24 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_MORC2_6th 0.74 58.0 5.72e-01 83.3% 80.0%
3707346 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 58.0 5.34e-01 84.8% 80.7%
3812766 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.73 58.0 5.70e-01 84.8% 88.6%
3867207 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.72 60.0 5.33e-01 90.9% 70.5%
3918299 4.1.1.376 beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.72 56.0 5.51e-01 81.8% 77.1%
3519884 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.71 56.0 4.85e-01 84.8% 71.0%
3886139 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 56.0 5.65e-01 84.8% 87.7%
3185321 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.70 54.0 5.23e-01 83.3% 82.7%
4022025 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.70 60.0 4.59e-01 93.9% 88.3%
4936914 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 54.0 4.57e-01 83.3% 53.3%
3740221 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.69 54.0 4.00e-01 83.3% 38.7%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.69 60.0 4.65e-01 97.0% 87.6%
3188712 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.69 54.0 4.73e-01 86.4% 77.0%
3387119 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 52.0 4.65e-01 83.3% 58.9%
4013811 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.68 53.0 4.87e-01 86.4% 83.3%
3319789 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 52.0 4.83e-01 83.3% 71.8%
3182097 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 47.0 4.80e-01 72.7% 73.8%
4523548 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.67 50.0 4.58e-01 78.8% 74.1%
3669494 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 54.0 4.17e-01 89.4% 84.7%
3229184 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 53.0 4.85e-01 84.8% 91.8%
4014568 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.66 46.0 5.06e-01 75.8% 87.3%
3492557 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.66 48.0 4.18e-01 83.3% 51.0%
3188394 4.8.1.22 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.66 52.0 4.30e-01 86.4% 66.7%
4013893 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.65 52.0 4.26e-01 86.4% 72.5%
3214653 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.53e-01 86.4% 61.1%
3229356 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.24e-01 84.8% 68.6%
3868602 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 48.0 4.26e-01 83.3% 66.0%
3740784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.48e-01 83.3% 67.1%
3834563 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 52.0 4.91e-01 92.4% 83.7%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.70e-01 84.8% 81.3%
3272363 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 46.0 4.15e-01 83.3% 56.8%
3782606 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.62 44.0 3.44e-01 75.8% 79.3%
3819397 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 47.0 4.46e-01 83.3% 68.8%
3721062 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.62 46.0 4.29e-01 81.8% 77.6%
3706000 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 47.0 4.58e-01 83.3% 88.0%
3226909 331.15.1.0 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 0.61 44.0 4.22e-01 77.3% 66.7%
3730011 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.60 47.0 3.74e-01 86.4% 66.4%
3394789 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 3.94e-01 83.3% 52.7%
3197566 4.1.1.89 beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.59 45.0 3.95e-01 83.3% 80.0%
3232582 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.00e-01 83.3% 62.1%
4398865 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 43.0 3.91e-01 81.8% 84.2%
4004815 4.1.1.166 beta barrels › SH3 › SH3 › SH3 › DUF2314 0.58 45.0 3.74e-01 86.4% 59.3%
3728770 220.1.1.201 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.57 40.0 3.50e-01 75.8% 68.2%
4504922 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.57 39.0 3.74e-01 75.8% 62.7%
4281699 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 43.0 4.15e-01 83.3% 81.3%
4078162 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 42.0 4.13e-01 83.3% 83.8%
3700518 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 41.0 3.40e-01 83.3% 58.5%
3597361 4.23.1.0 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like 0.55 41.0 3.38e-01 83.3% 58.5%
4378772 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.55 41.0 3.24e-01 81.8% 93.1%
3614586 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.55 43.0 3.54e-01 84.8% 49.2%
3511505 9.23.1.6 beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › DUF7042 0.54 45.0 3.72e-01 93.9% 76.7%
3583105 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.54 36.0 2.67e-01 71.2% 46.7%
3291389 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 46.0 3.53e-01 97.0% 51.0%
3259968 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.53 40.0 3.77e-01 84.8% 76.5%
4395961 212.1.1.14 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › CbiD 0.53 45.0 3.41e-01 98.5% 58.8%
3370313 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.53 43.0 3.33e-01 95.5% 49.7%
3974565 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.52 34.0 3.45e-01 75.8% 67.7%
4648965 4246.1.1.2 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.52 39.0 2.56e-01 84.8% 28.8%
3621690 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 40.0 3.49e-01 86.4% 65.7%
3492622 3338.1.1.0 a+b two layers › Fragilysin-3 prodomain-like › Fragilysin-3 prodomain › Fragilysin-3 prodomain 0.52 42.0 3.59e-01 97.0% 92.7%
3658750 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.52 42.0 3.54e-01 95.5% 64.8%
3608102 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 37.0 3.72e-01 78.8% 81.4%
4034488 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 46.0 3.60e-01 98.5% 48.1%
3278081 2.4.1.15 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2, CysA_C_terminal 0.51 42.0 3.53e-01 93.9% 99.2%
3932681 219.1.1.25 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.51 37.0 3.01e-01 83.3% 39.2%
4318553 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 41.0 2.80e-01 93.9% 87.1%
4085451 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.50 35.0 3.04e-01 77.3% 44.5%