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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00225

Bact-Vir

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00225

Identity

Kingdom:
phage

Quality

92.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-45
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ig5A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.78 55.0 3.78e-01 73.3% 30.4%
4bgdA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 66.0 5.20e-01 93.3% 98.9%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.66e-01 91.1% 95.1%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 50.0 4.15e-01 91.1% 82.5%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.12e-01 100.0% 83.7%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4629323 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.87 66.0 5.58e-01 82.2% 51.4%
3372267 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.80 67.0 5.64e-01 93.3% 100.0%
3371657 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.78 62.0 4.95e-01 88.9% 45.6%
4339648 101.1.2.852 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27213 0.76 69.0 5.24e-01 97.8% 70.5%
4968601 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 69.0 5.11e-01 100.0% 78.1%
3958385 101.1.2.670 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF4194 0.74 60.0 4.64e-01 91.1% 72.0%
5061575 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 66.0 5.06e-01 100.0% 76.0%
3996571 101.1.2.53 ↗ alpha arrays › HTH › HTH › winged helix domain › Mnd1 0.73 52.0 5.04e-01 91.1% 68.0%
3313157 101.1.2.524 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.73 52.0 4.35e-01 91.1% 45.3%
3832037 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 63.0 3.83e-01 100.0% 25.0%
3595881 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 55.0 3.15e-01 93.3% 32.3%
4200361 3018.1.1.0 ↗ a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like 0.67 59.0 4.61e-01 100.0% 72.6%
3935353 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 4.62e-01 95.6% 95.2%
3632602 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 4.39e-01 100.0% 68.2%
4169970 2003.1.5.82 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.62 52.0 3.27e-01 100.0% 34.1%
5011344 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 4.72e-01 97.8% 100.0%
4098825 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 54.0 4.29e-01 100.0% 70.0%
4943516 2004.11.1.2 ↗ a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N 0.56 45.0 2.88e-01 93.3% 21.7%
5017856 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 48.0 2.99e-01 100.0% 23.3%