←Back to structures
BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00226
Bact-VirBML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00226
Identity
- Kingdom:
- phage
Quality
77.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-56
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kl9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.68 | 59.0 | 5.08e-01 | 97.9% | 84.0% |
| 2khjA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 54.0 | 4.50e-01 | 100.0% | 85.4% |
| 1kk1A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 54.0 | 4.11e-01 | 100.0% | 52.3% |
| 3s9cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 52.0 | 3.90e-01 | 97.9% | 48.3% |
| 1o1yA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.60 | 49.0 | 3.26e-01 | 100.0% | 29.6% |
| 7oo1A02 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.58 | 41.0 | 3.05e-01 | 74.5% | 47.5% |
| 5c86A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 45.0 | 3.61e-01 | 91.5% | 87.1% |
| 1fhvA02 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 38.0 | 2.95e-01 | 76.6% | 80.6% |
| 1wz3A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 34.0 | 2.93e-01 | 78.7% | 39.2% |
| 3l7nA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.54 | 43.0 | 2.88e-01 | 100.0% | 30.8% |
| 1sddA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.54 | 44.0 | 3.58e-01 | 100.0% | 71.3% |
| 4lm6A00 | 3.90.510.10 | Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain | 0.53 | 37.0 | 3.49e-01 | 76.6% | 74.2% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 3.03e-01 | 76.6% | 61.6% |
| 3oc5A02 | 2.60.40.3240 | Mainly Beta › Sandwich › Immunoglobulin-like › Vibrio cholerae toxin co-regulated pilus biosynthesis protein F, C-terminal domain | 0.53 | 41.0 | 3.04e-01 | 89.4% | 67.4% |
| 4hbqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 3.42e-01 | 95.7% | 68.9% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3363751 | 4.1.1.246 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin | 0.69 | 59.0 | 4.52e-01 | 97.9% | 42.9% |
| 3929373 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.68 | 56.0 | 5.13e-01 | 95.7% | 70.0% |
| 3591144 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.68 | 60.0 | 4.19e-01 | 100.0% | 84.7% |
| 3243710 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 54.0 | 4.78e-01 | 89.4% | 62.9% |
| 4947612 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.67 | 59.0 | 4.16e-01 | 97.9% | 34.3% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 60.0 | 4.34e-01 | 100.0% | 50.4% |
| 4083915 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.65 | 52.0 | 4.62e-01 | 100.0% | 60.0% |
| 3437523 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.61 | 49.0 | 4.37e-01 | 100.0% | 62.9% |
| 3412870 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 50.0 | 4.46e-01 | 100.0% | 68.0% |
| 3515762 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.60 | 48.0 | 4.24e-01 | 100.0% | 58.7% |
| 3538152 | 109.3.1.164 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3, Ank_4 | 0.60 | 41.0 | 2.45e-01 | 74.5% | 18.0% |
| 3672735 | 4.1.1.303 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus | 0.60 | 47.0 | 4.35e-01 | 97.9% | 66.2% |
| 5035884 | 2004.6.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › C-terminal domain in a putative metallopeptidase YP_676511.1 › C-terminal domain in a putative metallopeptidase YP_676511.1 › MlrC_C | 0.59 | 47.0 | 3.26e-01 | 97.9% | 25.1% |
| 3708550 | 1056.1.1.0 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain | 0.58 | 46.0 | 2.90e-01 | 91.5% | 16.4% |
| 5059200 | 11.1.1.284 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 | 0.56 | 46.0 | 3.85e-01 | 93.6% | 87.1% |
| 3931672 | 2.3.1.1 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › TIMP | 0.56 | 39.0 | 2.91e-01 | 78.7% | 64.1% |
| 3266035 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.55 | 49.0 | 3.81e-01 | 100.0% | 51.5% |
| 4930241 | 229.1.1.1 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 | 0.54 | 45.0 | 3.77e-01 | 100.0% | 57.8% |
| 3716312 | 2011.1.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 | 0.53 | 43.0 | 2.57e-01 | 93.6% | 21.1% |
| 3961019 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.53 | 38.0 | 2.52e-01 | 80.9% | 87.8% |
| 3690719 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 38.0 | 2.88e-01 | 80.9% | 74.8% |
| 3194063 | 2.1.1.37 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind | 0.53 | 38.0 | 2.86e-01 | 80.9% | 77.8% |
| 3680609 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 36.0 | 2.61e-01 | 74.5% | 62.4% |
| 3637481 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.52 | 40.0 | 2.58e-01 | 85.1% | 32.2% |
| 3901071 | 101.1.2.98 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1 | 0.52 | 36.0 | 2.35e-01 | 72.3% | 16.1% |
| 5025583 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.51 | 35.0 | 2.90e-01 | 70.2% | 67.8% |
| 3580001 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 37.0 | 2.69e-01 | 74.5% | 54.3% |
| 3455119 | 221.1.1.80 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › KHA | 0.51 | 35.0 | 2.96e-01 | 83.0% | 42.5% |
| 3699792 | 150.5.1.120 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › IQ | 0.50 | 36.0 | 2.71e-01 | 72.3% | 96.7% |
| 3604850 | 868.1.1.9 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › RESC1_2 | 0.50 | 37.0 | 2.45e-01 | 97.9% | 77.4% |