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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00231

Bact-Vir

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00231

Identity

Kingdom:
phage

Quality

68.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-90
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.74 54.0 5.87e-01 95.0% 95.8%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.71 58.0 5.32e-01 100.0% 67.9%
4k00A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.70 60.0 4.70e-01 100.0% 78.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 4.77e-01 98.3% 69.2%
2gf6A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 60.0 4.66e-01 100.0% 80.5%
1njkA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 58.0 4.59e-01 100.0% 79.7%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.68 52.0 5.55e-01 98.3% 98.0%
2fujA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.67 58.0 4.73e-01 100.0% 89.8%
2egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 58.0 4.62e-01 100.0% 83.3%
2oggA01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.65 57.0 4.42e-01 100.0% 93.3%
2ov9C01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 54.0 4.22e-01 100.0% 65.3%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 55.0 4.17e-01 100.0% 76.3%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 55.0 4.57e-01 100.0% 77.4%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 54.0 4.39e-01 100.0% 88.1%
1q4tA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 54.0 4.24e-01 100.0% 69.7%
1g1bA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.64 56.0 4.12e-01 100.0% 66.5%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.64 50.0 3.88e-01 88.3% 58.9%
3hm0A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.64 54.0 4.39e-01 100.0% 86.5%
3lw3B00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 54.0 4.19e-01 100.0% 70.8%
2dslA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 52.0 4.33e-01 100.0% 81.7%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.07e-01 98.3% 60.0%
3f1tB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 52.0 4.13e-01 100.0% 75.0%
2oafB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 52.0 4.05e-01 100.0% 78.5%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.61 52.0 3.99e-01 100.0% 41.7%
2hx5A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 52.0 4.01e-01 98.3% 82.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.43e-01 98.3% 79.4%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.60 52.0 3.37e-01 100.0% 30.8%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.60 50.0 3.89e-01 100.0% 44.0%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.27e-01 96.7% 74.2%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.59 47.0 3.87e-01 100.0% 45.8%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 48.0 3.88e-01 96.7% 74.4%
6gmhI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 43.0 4.19e-01 96.7% 71.0%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.58 43.0 3.62e-01 80.0% 98.1%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.71e-01 98.3% 81.9%
3qcmA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 47.0 3.05e-01 91.7% 27.6%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 42.0 4.32e-01 96.7% 82.5%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.58 44.0 3.25e-01 100.0% 29.1%
4ztkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 49.0 3.24e-01 100.0% 64.6%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 49.0 3.31e-01 100.0% 80.0%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 49.0 4.04e-01 100.0% 52.6%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.13e-01 96.7% 79.4%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 42.0 3.37e-01 100.0% 38.0%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.55 39.0 3.46e-01 81.7% 70.6%
2daxA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 47.0 3.64e-01 100.0% 44.7%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 42.0 3.31e-01 100.0% 40.8%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 35.0 3.20e-01 98.3% 51.1%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.50 36.0 2.90e-01 78.3% 76.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596677 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.77 47.0 4.01e-01 78.3% 40.0%
4970648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.76 58.0 6.30e-01 100.0% 100.0%
4949036 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.75 57.0 6.13e-01 100.0% 98.0%
3496242 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 56.0 6.03e-01 98.3% 96.0%
3226909 331.15.1.0 a+b two layers › TBP-like › Anti-CRISPR protein AcrID1 › Anti-CRISPR protein AcrID1 0.75 55.0 5.13e-01 100.0% 62.7%
3977784 814.1.1.3 a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › UTRA 0.72 64.0 4.69e-01 100.0% 78.1%
5029226 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.72 56.0 5.85e-01 100.0% 92.7%
2882170 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.72 52.0 3.40e-01 76.7% 81.2%
5079755 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.71 54.0 5.63e-01 100.0% 90.9%
4014828 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 54.0 5.58e-01 100.0% 90.9%
3190757 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.70 54.0 5.41e-01 100.0% 83.3%
4990926 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.70 52.0 5.51e-01 96.7% 96.0%
4038280 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.69 61.0 4.56e-01 100.0% 76.7%
4081276 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.69 60.0 4.42e-01 100.0% 67.9%
5000727 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 53.0 5.55e-01 98.3% 92.7%
5054433 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 49.0 5.30e-01 90.0% 92.0%
4028728 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.68 52.0 5.38e-01 100.0% 90.9%
3608236 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.67 50.0 4.96e-01 100.0% 75.4%
3587884 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.67 58.0 4.50e-01 100.0% 77.1%
4500959 222.1.1.8 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 0.67 58.0 4.61e-01 100.0% 82.0%
3594465 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 51.0 5.25e-01 95.0% 90.9%
5050697 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.65 47.0 5.01e-01 100.0% 92.0%
5011152 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 50.0 5.15e-01 100.0% 94.5%
3783203 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.64 56.0 4.61e-01 100.0% 84.5%
3599172 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 47.0 4.61e-01 98.3% 75.4%
3230937 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.63 54.0 4.54e-01 100.0% 84.5%
3508100 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.63 51.0 3.94e-01 100.0% 38.6%
3781666 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.63 55.0 4.33e-01 100.0% 71.5%
3502573 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.63 55.0 4.55e-01 100.0% 83.6%
3329977 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.63 54.0 4.36e-01 100.0% 72.8%
153406 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.61 52.0 4.25e-01 96.7% 74.8%
4018425 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.61 50.0 3.84e-01 100.0% 66.7%
4997648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.60 42.0 4.52e-01 93.3% 92.0%
4292289 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 43.0 4.31e-01 98.3% 75.4%
3618439 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.60 50.0 4.29e-01 96.7% 88.0%
4037383 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 44.0 4.36e-01 98.3% 76.9%
184719 3514.1.1.1 a+b two layers › uncharacterized protein PA1076 › uncharacterized protein PA1076 › uncharacterized protein PA1076 › DUF5064 0.60 50.0 3.89e-01 100.0% 44.0%
4038269 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 44.0 4.35e-01 98.3% 76.9%
4051625 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 44.0 4.33e-01 98.3% 76.9%
3959649 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 49.0 3.58e-01 100.0% 56.3%
3188645 222.1.1.10 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 0.59 50.0 4.10e-01 98.3% 79.2%
3832534 243.3.1.26 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 0.59 51.0 4.46e-01 100.0% 82.1%
3213553 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.59 51.0 3.37e-01 100.0% 23.8%
3781936 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.59 50.0 4.16e-01 100.0% 81.7%
3420866 216.1.1.9 a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d2 0.58 41.0 3.56e-01 100.0% 46.0%
3394789 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 43.0 3.64e-01 100.0% 46.4%
4608418 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 39.0 3.59e-01 75.0% 64.7%
5043504 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 41.0 4.31e-01 95.0% 98.0%
3181290 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.55 45.0 3.68e-01 100.0% 63.8%