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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00262

Bact-Vir

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00262

Identity

Kingdom:
phage

Quality

92.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-88
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24835.2 best DUF7717 63.1 4.10e-17 95.2% 47.9%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.79 47.0 4.23e-01 87.3% 44.2%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.75 44.0 3.54e-01 82.5% 33.3%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.69 38.0 4.17e-01 81.0% 66.0%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 42.0 3.74e-01 96.8% 46.2%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.64 55.0 4.32e-01 98.4% 67.4%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.64 57.0 4.46e-01 100.0% 73.7%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 48.0 3.42e-01 95.2% 28.3%
3eo4D00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.62 51.0 3.79e-01 90.5% 82.7%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 52.0 4.10e-01 98.4% 79.3%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.61 45.0 2.95e-01 81.0% 64.1%
2xp1A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 52.0 4.55e-01 98.4% 64.2%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.59 47.0 3.27e-01 95.2% 78.1%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 3.87e-01 98.4% 75.2%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 42.0 3.41e-01 79.4% 45.7%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 37.0 3.79e-01 100.0% 68.9%
2v1lA00 3.10.450.430 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 0.57 44.0 3.57e-01 85.7% 52.7%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.57 39.0 3.76e-01 76.2% 62.2%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.56 45.0 3.94e-01 96.8% 63.0%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 45.0 2.96e-01 95.2% 100.0%
4gniA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 3.80e-01 95.2% 59.8%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 46.0 3.57e-01 100.0% 47.2%
8oqxA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 43.0 3.54e-01 98.4% 47.4%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.41e-01 84.1% 48.8%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 48.0 3.05e-01 100.0% 46.6%
3picA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 43.0 2.75e-01 90.5% 39.8%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 46.0 3.48e-01 100.0% 45.0%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.54 40.0 3.23e-01 84.1% 77.9%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 39.0 2.70e-01 79.4% 86.3%
1kaxA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.54 31.0 3.28e-01 96.8% 58.2%
2vgnA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.54 42.0 3.42e-01 96.8% 43.3%
1dt9A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.54 39.0 3.31e-01 100.0% 43.8%
3fqmA02 2.20.25.220 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C virus NS5A, 1B domain 0.53 46.0 4.19e-01 96.8% 93.0%
2e4qA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 47.0 3.96e-01 100.0% 60.2%
4odjA01 3.30.300.10 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.53 40.0 3.37e-01 84.1% 90.3%
2pvpA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 40.0 3.13e-01 85.7% 69.9%
1itvA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.51 42.0 3.05e-01 93.7% 83.6%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.51 38.0 3.07e-01 95.2% 39.1%
3omzA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.55e-01 92.1% 54.4%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 44.0 3.99e-01 100.0% 94.4%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.51 36.0 2.18e-01 74.6% 70.8%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.60e-01 95.2% 71.7%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 36.0 3.59e-01 100.0% 73.1%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 36.0 3.00e-01 100.0% 40.3%
4gniB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 44.0 3.36e-01 100.0% 50.3%
1wgvA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 3.02e-01 79.4% 60.5%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3915500 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.80 51.0 3.54e-01 98.4% 22.2%
3842923 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.78 49.0 3.45e-01 98.4% 22.9%
3989004 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.77 45.0 2.78e-01 82.5% 11.9%
4370678 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.77 45.0 2.72e-01 82.5% 10.8%
3730696 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.75 48.0 3.73e-01 77.8% 32.8%
3412045 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.74 51.0 3.57e-01 96.8% 24.3%
3982278 4312.1.1.3 a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.69 43.0 3.84e-01 90.5% 43.3%
4305933 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.69 35.0 3.76e-01 71.4% 52.7%
4626818 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.69 46.0 3.91e-01 95.2% 41.9%
3588663 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.66 44.0 3.93e-01 79.4% 46.3%
5015372 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.65 45.0 4.48e-01 100.0% 70.8%
6641 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.64 55.0 4.39e-01 98.4% 71.0%
3970247 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.64 49.0 4.12e-01 88.9% 48.2%
3721757 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 53.0 5.27e-01 96.8% 90.8%
3370663 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.64 41.0 4.20e-01 93.7% 69.5%
4964835 223.2.1.63 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.63 36.0 2.96e-01 84.1% 29.6%
3856372 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.63 47.0 3.32e-01 95.2% 26.8%
3742163 109.4.1.1794 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.62 51.0 3.19e-01 90.5% 57.0%
3283507 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.62 51.0 4.49e-01 88.9% 70.0%
4144736 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.62 42.0 3.50e-01 100.0% 39.1%
4680318 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.61 47.0 4.17e-01 92.1% 57.8%
3515528 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.61 42.0 4.11e-01 73.0% 87.1%
3231860 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 48.0 3.83e-01 84.1% 52.5%
4936345 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 44.0 4.32e-01 96.8% 70.0%
4539347 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.61 46.0 4.03e-01 93.7% 53.0%
3323400 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 45.0 3.66e-01 95.2% 42.5%
3629049 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.60 40.0 3.63e-01 71.4% 63.2%
3228052 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.59 49.0 3.57e-01 90.5% 36.5%
3589304 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.59 47.0 4.44e-01 85.7% 78.7%
4027162 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.59 53.0 3.19e-01 100.0% 16.1%
3511590 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.98e-01 93.7% 54.3%
4888953 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 45.0 2.89e-01 95.2% 31.3%
4975639 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 3.18e-01 98.4% 36.2%
4561058 1185.1.1.2 a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › Imm1 0.56 46.0 3.95e-01 98.4% 100.0%
4998670 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 45.0 4.03e-01 88.9% 70.0%
3387994 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.56 39.0 3.63e-01 98.4% 58.7%
3164102 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.55 36.0 4.01e-01 96.8% 93.3%
3610662 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 45.0 3.12e-01 100.0% 77.4%
3530195 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.55 44.0 3.60e-01 93.7% 46.7%
4483396 6148.1.1.2 few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM › Thyroglobulin_1 0.55 43.0 3.33e-01 92.1% 60.0%
1174175 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.55 46.0 3.57e-01 100.0% 47.2%
5069292 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.55 44.0 3.61e-01 95.2% 48.7%
4030254 109.21.1.3 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C 0.55 43.0 2.48e-01 92.1% 17.0%
4024169 5.1.3.160 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.54 42.0 2.61e-01 92.1% 36.2%
3487523 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.54 38.0 3.33e-01 74.6% 72.6%
3705938 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.53 43.0 3.61e-01 95.2% 92.5%
3542308 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.53 40.0 2.86e-01 84.1% 25.1%
5033346 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 44.0 3.55e-01 95.2% 46.4%
3896806 5.1.4.341 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd 0.53 43.0 2.63e-01 98.4% 27.1%
3910728 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 39.0 2.98e-01 79.4% 48.4%
5026550 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 3.35e-01 95.2% 46.1%
4969626 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 44.0 3.55e-01 95.2% 47.2%
4964957 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 3.45e-01 96.8% 48.7%
5058066 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.52 41.0 3.40e-01 96.8% 47.8%
4147566 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 43.0 3.51e-01 96.8% 49.2%
3597363 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 42.0 3.36e-01 93.7% 74.1%
4025191 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 36.0 3.07e-01 73.0% 74.3%
4159425 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.51 42.0 3.47e-01 96.8% 49.2%
3490944 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 37.0 2.86e-01 77.8% 50.3%
3384882 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 36.0 3.14e-01 76.2% 74.0%
3900936 247.1.1.5 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.51 44.0 2.91e-01 100.0% 28.5%
3311716 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.50 41.0 3.36e-01 95.2% 99.2%
5023930 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 38.0 3.49e-01 100.0% 61.2%
5063197 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 42.0 3.51e-01 95.2% 53.6%