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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00315
Bact-VirBML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00315
Identity
- Kingdom:
- phage
Quality
91.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-123
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.73 | 33.0 | 4.08e-01 | 80.2% | 67.1% |
| 3bxoA02 | 2.20.130.10 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains | 0.64 | 32.0 | 4.55e-01 | 88.4% | 100.0% |
| 7szeB02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.61 | 34.0 | 2.90e-01 | 84.3% | 35.9% |
| 1y8cA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.60 | 30.0 | 4.13e-01 | 90.9% | 96.7% |
| 3ovcA01 | 3.30.200.150 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.60 | 28.0 | 3.60e-01 | 87.6% | 76.1% |
| 1ylxA00 | 3.30.70.1480 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like | 0.58 | 31.0 | 3.45e-01 | 73.6% | 63.6% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 40.0 | 3.75e-01 | 79.3% | 58.1% |
| 3esiA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 46.0 | 4.59e-01 | 85.1% | 88.7% |
| 7wvzA03 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.56 | 43.0 | 3.26e-01 | 79.3% | 40.7% |
| 1bebA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 42.0 | 3.92e-01 | 79.3% | 76.3% |
| 1y7uA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 46.0 | 4.13e-01 | 86.8% | 70.1% |
| 2bi0A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 47.0 | 4.40e-01 | 90.9% | 96.6% |
| 4oocA00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.55 | 43.0 | 3.27e-01 | 81.8% | 38.8% |
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 40.0 | 3.60e-01 | 78.5% | 74.9% |
| 2c2iA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 45.0 | 4.23e-01 | 90.1% | 98.7% |
| 5egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 49.0 | 4.32e-01 | 96.7% | 77.2% |
| 1m6kA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 38.0 | 3.03e-01 | 73.6% | 90.8% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.53 | 26.0 | 3.12e-01 | 85.1% | 67.5% |
| 2gvhB02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 42.0 | 4.26e-01 | 81.8% | 94.0% |
| 1dmlA00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.52 | 41.0 | 3.16e-01 | 81.8% | 51.3% |
| 5kkuD00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.52 | 42.0 | 3.17e-01 | 85.1% | 39.8% |
| 1hq0A00 | 3.60.100.10 | Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain | 0.51 | 45.0 | 3.42e-01 | 96.7% | 94.6% |
| 4ienA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 43.0 | 4.00e-01 | 90.1% | 79.2% |
| 3pquA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.51 | 46.0 | 4.06e-01 | 100.0% | 94.9% |
| 3b7kB01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 41.0 | 3.96e-01 | 86.0% | 82.1% |
| 3ijtB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.50 | 34.0 | 3.26e-01 | 70.2% | 79.0% |
| 2gvhC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 45.0 | 4.34e-01 | 97.5% | 97.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5014277 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.71 | 30.0 | 3.53e-01 | 83.5% | 55.3% |
| 4964031 | 7089.1.1.7 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF7543 | 0.67 | 33.0 | 4.26e-01 | 89.3% | 81.4% |
| 3935896 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.66 | 31.0 | 3.04e-01 | 80.2% | 40.0% |
| 3258590 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.64 | 36.0 | 4.02e-01 | 89.3% | 69.5% |
| 4286606 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.57 | 44.0 | 4.11e-01 | 81.0% | 80.7% |
| 3613921 | 330.1.1.22 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26536 | 0.56 | 32.0 | 3.17e-01 | 71.9% | 52.8% |
| 3920558 | 223.1.1.146 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N, VGCC_alpha2, PF30670 | 0.56 | 44.0 | 2.87e-01 | 86.0% | 97.0% |
| 4446229 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.56 | 43.0 | 4.24e-01 | 81.0% | 90.8% |
| 4206564 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.56 | 43.0 | 4.17e-01 | 81.0% | 88.9% |
| 3952590 | 222.1.1.17 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N | 0.54 | 42.0 | 4.03e-01 | 80.2% | 80.0% |
| 3412032 | 223.1.1.71 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 | 0.54 | 43.0 | 3.35e-01 | 86.0% | 94.4% |
| 3561689 | 223.1.1.71 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 | 0.54 | 43.0 | 3.44e-01 | 86.0% | 91.6% |
| 3410646 | 223.1.1.71 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 | 0.53 | 42.0 | 3.27e-01 | 86.0% | 93.7% |
| 3198094 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.53 | 26.0 | 3.09e-01 | 85.1% | 67.5% |
| 3959606 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 36.0 | 3.25e-01 | 70.2% | 98.2% |
| 3327101 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.52 | 27.0 | 3.14e-01 | 84.3% | 70.0% |
| 4187239 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.52 | 44.0 | 3.69e-01 | 91.7% | 74.8% |
| 1491977 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.52 | 37.0 | 3.26e-01 | 71.9% | 96.6% |
| 3611189 | 222.1.1.10 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3 | 0.52 | 44.0 | 3.91e-01 | 90.9% | 72.9% |
| 3192871 | 220.1.1.194 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2nd_LRR | 0.52 | 40.0 | 3.55e-01 | 81.8% | 81.1% |
| 3836347 | 243.3.1.26 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 | 0.51 | 37.0 | 3.71e-01 | 82.6% | 72.8% |
| 4209630 | 331.3.1.20 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C | 0.51 | 37.0 | 3.08e-01 | 76.0% | 72.4% |
| 4248012 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.51 | 40.0 | 3.86e-01 | 85.1% | 83.6% |
| 2516709 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.50 | 36.0 | 3.29e-01 | 76.0% | 97.7% |
| 3193266 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.50 | 40.0 | 3.79e-01 | 85.1% | 93.8% |