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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00321

Bact-Vir

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00321

Identity

Kingdom:
phage

Quality

56.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 80-160
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 54.0 5.59e-01 77.8% 90.8%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 46.0 4.93e-01 71.6% 91.5%
1ne3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 32.0 3.43e-01 93.8% 63.2%
1a8rA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.55 49.0 4.15e-01 100.0% 75.0%
1kblA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 38.0 3.64e-01 72.8% 88.8%
3irbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 31.0 3.37e-01 100.0% 64.7%
5jgfA02 2.30.250.10 Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 0.54 38.0 3.27e-01 75.3% 75.9%
2q18X02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.54 44.0 3.45e-01 98.8% 70.8%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.53 37.0 3.35e-01 71.6% 59.1%
5pabH01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 36.0 3.22e-01 71.6% 59.8%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.51e-01 70.4% 80.0%
3fzzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 35.0 3.15e-01 70.4% 65.0%
2z4dA00 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.51 35.0 3.38e-01 100.0% 60.4%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.51 32.0 2.97e-01 100.0% 46.0%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.50 34.0 3.09e-01 70.4% 59.6%
5bp3B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.50 42.0 3.03e-01 100.0% 84.4%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3508212 3115.1.1.6 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.68 48.0 5.11e-01 72.8% 90.0%
3551719 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.68 47.0 4.87e-01 71.6% 86.7%
3391889 11.1.6.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA 0.65 53.0 4.56e-01 88.9% 77.7%
3622937 11.1.6.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › UPA 0.62 50.0 4.26e-01 90.1% 74.3%
3923143 633.23.1.17 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.61 41.0 2.94e-01 100.0% 23.7%
3787712 3333.1.1.0 ↗ a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 0.60 48.0 3.94e-01 87.7% 94.7%
3197583 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.59 47.0 3.68e-01 90.1% 72.0%
3503000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 3.98e-01 71.6% 95.3%
4980439 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.58 40.0 3.09e-01 71.6% 90.0%
4030650 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.55 37.0 3.11e-01 70.4% 97.3%
4494466 2484.1.1.231 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C 0.55 46.0 3.36e-01 96.3% 59.6%
4984815 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 37.0 3.00e-01 72.8% 38.2%
3445812 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.02e-01 100.0% 40.0%
3405278 382.1.1.3 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Activin_recp 0.53 36.0 3.41e-01 71.6% 86.0%
3583241 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 34.0 3.20e-01 98.8% 51.4%
3799804 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.52 43.0 3.30e-01 92.6% 87.4%
4498349 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.52 37.0 2.89e-01 75.3% 87.2%
3727317 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.51 42.0 3.00e-01 100.0% 75.3%
5051783 206.1.3.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.50 40.0 2.75e-01 90.1% 66.6%
3177250 75.1.1.1 ↗ beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like › Pro_isomerase 0.50 38.0 2.86e-01 90.1% 30.5%
3295440 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 33.0 2.72e-01 100.0% 33.3%
5029143 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.50 38.0 3.14e-01 84.0% 91.9%
D2 medium residues 10-76
PDB