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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00326

Bact-Vir

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00326

Identity

Kingdom:
phage

Quality

86.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-78
PDB
Domain cluster: rep: scnpilot_solids2_trim150_scaffold_133_prodigal-single.1__X__X__00035__D13-85
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 48.0 5.36e-01 85.7% 80.4%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 51.0 5.88e-01 84.3% 100.0%
1yvuA02 2.30.340.10 Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily 0.71 56.0 5.05e-01 84.3% 80.6%
2re3A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.67 44.0 4.47e-01 82.9% 68.6%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.67e-01 88.6% 57.4%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 39.0 4.06e-01 82.9% 63.6%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 38.0 3.77e-01 82.9% 55.4%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 37.0 3.87e-01 82.9% 60.6%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 37.0 4.00e-01 82.9% 65.6%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.10e-01 84.3% 93.9%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 38.0 3.89e-01 81.4% 61.2%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.62 46.0 4.01e-01 85.7% 52.9%
2ky8A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.60 38.0 3.86e-01 88.6% 64.3%
3ec3A02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 39.0 3.30e-01 70.0% 82.4%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 3.90e-01 85.7% 64.0%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.56 48.0 3.23e-01 98.6% 79.3%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 37.0 3.83e-01 78.6% 75.8%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 35.0 3.57e-01 85.7% 68.2%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.50e-01 78.6% 17.3%
5hy7B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 40.0 2.59e-01 80.0% 22.9%
2lwyA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.53 38.0 3.21e-01 78.6% 76.8%
4b6dB00 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 34.0 3.68e-01 75.7% 80.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3826141 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.45e-01 88.6% 77.8%
4013325 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.66 56.0 4.57e-01 92.9% 70.4%
3612351 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.95e-01 85.7% 88.0%
3585474 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.34e-01 87.1% 68.6%
5054112 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.75e-01 78.6% 87.7%
3839298 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.59 42.0 3.62e-01 75.7% 94.8%
3409738 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.58 40.0 4.19e-01 71.4% 80.0%
3628462 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 40.0 4.28e-01 75.7% 86.7%
3551896 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.56 38.0 3.89e-01 71.4% 80.0%
3899494 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.30e-01 78.6% 46.9%
5023934 4160.1.1.3 ↗ beta complex topology › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › PF26233 0.54 46.0 3.41e-01 97.1% 86.7%
3743248 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.54 40.0 3.05e-01 81.4% 44.6%
3909439 220.1.1.40 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › OCRL_clath_bd 0.53 39.0 3.35e-01 78.6% 56.5%
4324097 4186.1.1.1 ↗ beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p 0.52 35.0 3.11e-01 95.7% 49.0%
3722454 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.51 38.0 3.04e-01 82.9% 88.0%
3507601 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.39e-01 81.4% 73.3%
5057445 4.7.1.1 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.50 41.0 3.90e-01 91.4% 96.5%