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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00446

Bact-Vir

BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00446

Identity

Kingdom:
phage

Quality

69.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 87-176
PDB
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 38.0 3.93e-01 97.8% 83.3%
2qz8A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.52 36.0 3.81e-01 97.8% 81.5%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945828 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.77 64.0 6.43e-01 100.0% 87.8%
3963488 821.1.1.7 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.74 70.0 6.34e-01 100.0% 82.6%
4269273 4076.4.1.1 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C 0.57 30.0 3.70e-01 96.7% 95.6%
4952672 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.57 30.0 3.53e-01 97.8% 78.2%
5015232 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.56 30.0 3.59e-01 98.9% 81.8%
3703797 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.55 28.0 3.33e-01 96.7% 74.5%
3354676 10.9.1.1 beta sandwiches › jelly-roll › C-terminal domain of mullusc hemocyanin › C-terminal domain of mullusc hemocyanin › PPO1_KFDV 0.51 37.0 3.85e-01 77.8% 82.4%
D2 high residues 204-256
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02954.26 best HTH_8 25.0 1.80e-05 66.0% 83.3%
CATH (93)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1etkA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.89 68.0 5.97e-01 81.1% 60.0%
2m8gX00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.88 71.0 6.41e-01 92.5% 65.7%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 71.0 5.94e-01 98.1% 72.7%
5y9sC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 68.0 5.80e-01 96.2% 75.6%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 68.0 5.62e-01 96.2% 67.4%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 5.56e-01 79.2% 87.7%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 68.0 5.62e-01 98.1% 72.2%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.76 54.0 3.83e-01 75.5% 54.2%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.76 64.0 4.97e-01 92.5% 54.5%
2ijlB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 67.0 5.26e-01 100.0% 66.1%
1b9mB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 67.0 5.42e-01 100.0% 69.7%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 63.0 5.38e-01 94.3% 72.9%
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 64.0 5.77e-01 96.2% 75.0%
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 54.0 5.18e-01 79.2% 68.3%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 60.0 5.73e-01 90.6% 95.1%
1g2hA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.74 55.0 5.29e-01 83.0% 72.1%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.73 59.0 4.32e-01 92.5% 44.0%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 4.79e-01 98.1% 55.0%
3ulqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 6.08e-01 98.1% 94.8%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 5.53e-01 96.2% 90.3%
2jn6A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.72 55.0 4.68e-01 83.0% 52.9%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.72 61.0 4.62e-01 98.1% 46.6%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 61.0 4.90e-01 96.2% 51.9%
4gvpA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.71 60.0 4.03e-01 96.2% 26.2%
4nqwA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.05e-01 98.1% 68.8%
1a04A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 59.0 5.24e-01 96.2% 67.5%
5f64A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 58.0 5.23e-01 94.3% 73.3%
2dbbB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 56.0 5.58e-01 90.6% 94.5%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.69 60.0 4.77e-01 98.1% 94.5%
6v7xB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.67e-01 94.3% 94.6%
2lfwA01 1.20.140.160 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain 0.69 52.0 3.88e-01 100.0% 31.2%
1p4wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 5.05e-01 98.1% 63.2%
6jqsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.64e-01 100.0% 85.1%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 48.0 4.79e-01 75.5% 72.2%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.55e-01 100.0% 87.0%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 50.0 4.94e-01 77.4% 87.3%
2o8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 52.0 5.03e-01 98.1% 73.8%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.68 49.0 4.89e-01 79.2% 76.8%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 60.0 4.34e-01 100.0% 41.1%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 5.46e-01 98.1% 87.3%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 55.0 5.50e-01 94.3% 91.1%
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 57.0 4.49e-01 94.3% 69.4%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.41e-01 96.2% 98.4%
3vuqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 57.0 4.01e-01 98.1% 60.2%
6uglB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 5.28e-01 90.6% 84.5%
2llkA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 48.0 5.10e-01 77.4% 100.0%
2dt5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.21e-01 100.0% 90.4%
3tgnB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.33e-01 98.1% 100.0%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.39e-01 98.1% 95.3%
2ia0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 5.35e-01 92.5% 100.0%
5dajD00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 54.0 3.68e-01 92.5% 51.6%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.82e-01 86.8% 74.6%
5douA01 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.66 49.0 3.51e-01 83.0% 25.7%
6cc0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 5.22e-01 100.0% 78.6%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 4.96e-01 98.1% 83.7%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.03e-01 98.1% 98.6%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.21e-01 100.0% 47.8%
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.24e-01 100.0% 53.1%
2p5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 5.23e-01 92.5% 98.1%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.84e-01 100.0% 76.7%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 55.0 3.82e-01 100.0% 30.4%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 54.0 4.72e-01 98.1% 78.2%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 4.19e-01 100.0% 51.1%
5xsoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.84e-01 98.1% 73.7%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.25e-01 100.0% 48.4%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 5.01e-01 96.2% 100.0%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 3.97e-01 100.0% 54.3%
2qtqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 53.0 3.62e-01 94.3% 80.2%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.74e-01 100.0% 82.6%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 56.0 4.81e-01 100.0% 82.1%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 52.0 4.56e-01 100.0% 65.6%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 4.14e-01 100.0% 54.3%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 53.0 3.67e-01 100.0% 30.2%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 55.0 4.81e-01 100.0% 82.5%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 50.0 3.54e-01 94.3% 55.1%
2qibB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 53.0 3.56e-01 96.2% 44.2%
2fbiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 51.0 3.97e-01 100.0% 55.1%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.65e-01 100.0% 77.4%
1u2wD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.39e-01 98.1% 55.3%
2ao9I01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 48.0 4.10e-01 100.0% 52.9%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.65e-01 100.0% 88.6%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.50e-01 100.0% 69.8%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.57e-01 100.0% 70.4%
3k69A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 3.81e-01 100.0% 46.7%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.49e-01 100.0% 67.1%
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.84e-01 100.0% 100.0%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.62e-01 100.0% 83.1%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.65e-01 100.0% 93.3%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.25e-01 100.0% 69.1%
2wuiA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 45.0 3.25e-01 96.2% 48.5%
3bhqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 51.0 3.44e-01 100.0% 27.7%
5gj7A01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 44.0 3.46e-01 92.5% 60.0%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.55 45.0 3.79e-01 100.0% 52.5%
ECOD (100)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969573 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.98 75.0 7.17e-01 79.2% 71.2%
4010144 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.97 75.0 7.45e-01 81.1% 78.2%
4359947 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.92 74.0 6.85e-01 84.9% 72.3%
1095020 101.1.1.18 alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 0.88 71.0 6.41e-01 92.5% 65.7%
3973679 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 76.0 6.33e-01 98.1% 75.3%
3280686 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.81 71.0 5.73e-01 98.1% 58.0%
3970001 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 72.0 5.94e-01 98.1% 72.2%
3975780 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.80 72.0 5.93e-01 98.1% 71.1%
3587054 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.80 72.0 6.08e-01 100.0% 76.5%
4955851 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.79 72.0 4.71e-01 98.1% 31.0%
4297073 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.79 71.0 5.85e-01 98.1% 71.1%
5025805 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 59.0 5.86e-01 83.0% 78.2%
3946019 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.79 70.0 5.79e-01 98.1% 71.1%
4010187 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.79 71.0 5.87e-01 100.0% 72.2%
3970403 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.78 69.0 5.75e-01 98.1% 71.1%
3974583 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.78 71.0 5.78e-01 100.0% 67.4%
4954184 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.78 71.0 5.86e-01 100.0% 80.0%
4383339 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.78 69.0 5.62e-01 98.1% 67.4%
5058722 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.78 70.0 5.46e-01 100.0% 71.8%
4983387 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 70.0 5.36e-01 100.0% 70.4%
4102412 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.77 67.0 5.65e-01 98.1% 72.2%
4653037 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.77 68.0 5.20e-01 100.0% 58.3%
4932931 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.77 69.0 5.36e-01 100.0% 73.6%
3967891 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.76 67.0 5.71e-01 98.1% 75.3%
3584355 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 67.0 6.23e-01 96.2% 86.2%
4380346 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.76 67.0 5.58e-01 98.1% 70.0%
3985435 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 54.0 5.90e-01 75.5% 100.0%
3968456 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.76 62.0 4.96e-01 92.5% 51.9%
3979933 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.76 68.0 5.54e-01 100.0% 67.4%
3942606 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.75 66.0 5.65e-01 98.1% 74.1%
4664006 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.75 67.0 5.62e-01 100.0% 71.1%
5053441 101.1.1.371 alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 0.75 58.0 5.55e-01 84.9% 73.3%
4215338 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.75 66.0 5.55e-01 100.0% 71.1%
3956897 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.75 61.0 4.87e-01 90.6% 72.4%
5026928 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 5.22e-01 88.7% 76.2%
3283527 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.74 64.0 5.64e-01 98.1% 75.0%
3990779 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 63.0 4.99e-01 96.2% 49.1%
3964284 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 5.62e-01 86.8% 76.7%
4398621 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.74 65.0 5.48e-01 100.0% 70.0%
4309654 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.74 54.0 5.40e-01 79.2% 76.4%
4965520 101.1.1.556 alpha arrays › HTH › HTH › Three-helical HTH › DUF7317 0.74 55.0 5.44e-01 79.2% 78.2%
4875610 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.74 62.0 5.34e-01 96.2% 69.8%
4046680 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.74 64.0 5.25e-01 100.0% 66.0%
3981080 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.74 65.0 5.55e-01 100.0% 75.3%
4297810 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.73 65.0 5.45e-01 100.0% 72.2%
4295835 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 55.0 5.79e-01 92.5% 97.8%
3962903 101.1.2.486 alpha arrays › HTH › HTH › winged helix domain › HTH_58 0.73 51.0 5.54e-01 79.2% 100.0%
3966780 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 63.0 5.35e-01 100.0% 71.1%
3288492 101.1.1.13 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 0.72 55.0 5.90e-01 100.0% 97.8%
4411930 101.1.2.40 alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 0.72 59.0 4.37e-01 94.3% 45.5%
4992849 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.72 54.0 4.69e-01 81.1% 56.2%
5030797 101.1.11.2 alpha arrays › HTH › HTH › Ribbon-helix-helix › RHH_1 0.71 53.0 4.47e-01 81.1% 50.0%
3943933 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.71 61.0 5.23e-01 100.0% 77.8%
4590066 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.71 60.0 4.71e-01 94.3% 70.8%
3967992 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.71 61.0 5.12e-01 100.0% 67.4%
3968396 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.71 61.0 5.20e-01 100.0% 71.1%
3970777 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 5.15e-01 100.0% 73.3%
5028174 101.1.11.203 alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.71 53.0 5.27e-01 84.9% 78.2%
4008046 101.1.1.348 alpha arrays › HTH › HTH › Three-helical HTH › PF30461 0.70 52.0 5.33e-01 100.0% 86.0%
4945932 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.70 60.0 5.00e-01 98.1% 81.1%
4492035 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 59.0 5.44e-01 96.2% 78.6%
4998401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.85e-01 92.5% 98.0%
3288592 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 61.0 5.75e-01 100.0% 84.6%
3942695 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.70 60.0 5.64e-01 98.1% 92.3%
4162857 101.1.1.17 alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.69 49.0 5.06e-01 100.0% 82.0%
3283074 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 60.0 5.19e-01 100.0% 64.7%
3975610 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.69 57.0 5.30e-01 96.2% 77.1%
3962552 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.69 58.0 5.27e-01 98.1% 73.3%
5052142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 53.0 5.61e-01 84.9% 100.0%
4932316 101.1.1.40 alpha arrays › HTH › HTH › Three-helical HTH › Recombinase 0.68 57.0 4.64e-01 92.5% 77.0%
3968151 101.1.3.1 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE 0.68 58.0 5.08e-01 100.0% 64.7%
5076135 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 55.0 5.36e-01 94.3% 81.7%
5070906 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 50.0 4.81e-01 79.2% 70.0%
5021859 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.68 56.0 5.36e-01 98.1% 89.2%
5074288 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.67 55.0 5.30e-01 92.5% 88.3%
5058606 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.00e-01 96.2% 77.3%
3953587 2008.1.1.168 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF30184 0.67 56.0 4.67e-01 98.1% 74.0%
3401087 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.67 51.0 5.24e-01 100.0% 88.0%
4973199 101.1.1.60 alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.67 55.0 5.34e-01 94.3% 85.0%
5060354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 5.10e-01 94.3% 84.6%
5078207 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 49.0 4.96e-01 81.1% 83.3%
4972338 4154.1.1.22 beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F_TDP 0.66 52.0 3.81e-01 90.6% 44.5%
3587467 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.66 52.0 5.12e-01 92.5% 100.0%
4968115 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.92e-01 94.3% 82.9%
4974616 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 53.0 5.09e-01 86.8% 91.7%
3711450 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.65 56.0 4.96e-01 98.1% 70.0%
5075696 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 4.96e-01 100.0% 92.0%
4467398 101.1.2.81 alpha arrays › HTH › HTH › winged helix domain › Put_DNA-bind_N 0.64 54.0 5.05e-01 100.0% 91.4%
4997095 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.64 53.0 4.19e-01 100.0% 45.6%
4064415 4187.1.1.0 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like 0.64 54.0 4.08e-01 100.0% 45.0%
4994133 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.63 51.0 4.42e-01 96.2% 56.5%
3929142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.93e-01 92.5% 81.7%
5009799 101.1.2.554 alpha arrays › HTH › HTH › winged helix domain › PF30184 0.63 54.0 4.68e-01 100.0% 81.2%
3511008 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.62 54.0 4.58e-01 100.0% 70.0%
4188620 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.62 54.0 4.66e-01 100.0% 77.6%
4060647 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.62 50.0 4.76e-01 100.0% 76.9%
3796903 101.1.15.0 alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.62 54.0 4.60e-01 98.1% 69.4%
3626670 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.60 52.0 4.46e-01 100.0% 67.8%
4989929 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 45.0 4.74e-01 94.3% 97.8%
4962047 101.1.2.924 alpha arrays › HTH › HTH › winged helix domain › DUF7342 0.59 50.0 4.62e-01 100.0% 91.4%
D3 medium residues 10-81
PDB