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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00462
Bact-VirBML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00462
Identity
- Kingdom:
- phage
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 132-182
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 62.0 | 5.58e-01 | 100.0% | 82.9% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.69 | 58.0 | 5.96e-01 | 98.0% | 100.0% |
| 4cpgA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.68 | 54.0 | 4.94e-01 | 100.0% | 66.7% |
| 3n98A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.67 | 57.0 | 3.40e-01 | 100.0% | 12.5% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 47.0 | 4.30e-01 | 100.0% | 61.2% |
| 1gm5A01 | 1.20.120.630 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › RecG, N-terminal domain | 0.61 | 47.0 | 4.02e-01 | 90.2% | 48.4% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 51.0 | 5.08e-01 | 96.1% | 100.0% |
| 4jccA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.61 | 40.0 | 2.68e-01 | 78.4% | 19.4% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 49.0 | 3.49e-01 | 98.0% | 32.0% |
| 1d3yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 53.0 | 4.69e-01 | 98.0% | 71.8% |
| 2w4sA00 | 1.10.10.1440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PHAX RNA-binding domain | 0.58 | 43.0 | 3.62e-01 | 80.4% | 70.9% |
| 2fphX01 | 3.30.1370.160 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.56 | 42.0 | 3.64e-01 | 100.0% | 53.2% |
| 2lmlA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.53 | 38.0 | 3.18e-01 | 76.5% | 73.6% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 39.0 | 3.33e-01 | 96.1% | 48.9% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3199964 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.72 | 62.0 | 4.10e-01 | 98.0% | 25.3% |
| 4053732 | 219.1.1.1 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 | 0.71 | 49.0 | 2.97e-01 | 94.1% | 11.1% |
| 4001440 | 3278.1.1.0 ↗ | extended segments › Transmembrane helix in sodium-potassium ATPase beta subunit › Transmembrane helix in sodium-potassium ATPase beta subunit › Transmembrane helix in sodium-potassium ATPase beta subunit | 0.70 | 58.0 | 5.69e-01 | 92.2% | 100.0% |
| 5019253 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.66 | 54.0 | 3.26e-01 | 98.0% | 13.2% |
| 5066169 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 51.0 | 3.90e-01 | 90.2% | 37.8% |
| 3642639 | 3922.1.1.269 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook | 0.59 | 48.0 | 3.89e-01 | 98.0% | 45.7% |
| None | — | 0.59 | 46.0 | 2.90e-01 | 92.2% | 15.7% | |
| 3175038 | 2484.1.1.237 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TYA | 0.50 | 41.0 | 3.48e-01 | 94.1% | 68.9% |