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BML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00473
Bact-VirBML_coassembly_scaffold_172_curated_closed_complete_prodigal-single.1__X__X__00473
Identity
- Kingdom:
- phage
Quality
80.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-76
Domain cluster:
representative
CATH (43)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 37.0 | 3.88e-01 | 84.9% | 60.6% |
| 2n54B00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 38.0 | 3.97e-01 | 97.3% | 66.7% |
| 3n0qA01 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.60 | 52.0 | 3.55e-01 | 100.0% | 55.7% |
| 2ovsA00 | 2.40.128.380 | Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR | 0.59 | 42.0 | 3.57e-01 | 74.0% | 46.6% |
| 5hkeA01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.59 | 45.0 | 2.96e-01 | 80.8% | 43.6% |
| 2jpiA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.59 | 46.0 | 4.25e-01 | 100.0% | 64.6% |
| 2hezA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.59 | 44.0 | 2.91e-01 | 80.8% | 42.5% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.58 | 49.0 | 4.52e-01 | 100.0% | 71.3% |
| 1vyfA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 51.0 | 4.13e-01 | 95.9% | 79.3% |
| 1yprA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.57 | 51.0 | 4.29e-01 | 100.0% | 72.0% |
| 1m3qA01 | 3.30.310.40 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.57 | 43.0 | 4.07e-01 | 95.9% | 66.3% |
| 3q6aB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.57 | 49.0 | 4.07e-01 | 97.3% | 71.6% |
| 1odhA01 | 2.20.25.670 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain | 0.57 | 47.0 | 4.79e-01 | 95.9% | 91.5% |
| 4h0aA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.55 | 48.0 | 3.26e-01 | 100.0% | 31.2% |
| 2acaA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.55 | 48.0 | 3.69e-01 | 100.0% | 75.3% |
| 3uaqB02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 42.0 | 3.31e-01 | 84.9% | 75.5% |
| 2z0fA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.55 | 48.0 | 4.32e-01 | 100.0% | 78.4% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 47.0 | 3.92e-01 | 95.9% | 81.9% |
| 2xepB02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 47.0 | 3.30e-01 | 100.0% | 80.5% |
| 1p6pA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 46.0 | 3.91e-01 | 95.9% | 82.4% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 47.0 | 3.79e-01 | 97.3% | 77.3% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.54 | 47.0 | 3.68e-01 | 100.0% | 77.0% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 49.0 | 3.90e-01 | 100.0% | 94.1% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.53 | 49.0 | 3.90e-01 | 100.0% | 69.1% |
| 1mhmA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.53 | 46.0 | 3.21e-01 | 100.0% | 32.4% |
| 5fl3A01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 48.0 | 4.31e-01 | 100.0% | 85.0% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 43.0 | 4.12e-01 | 98.6% | 77.6% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.52 | 45.0 | 3.55e-01 | 100.0% | 77.7% |
| 2n93A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 44.0 | 3.71e-01 | 95.9% | 81.5% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 47.0 | 3.76e-01 | 100.0% | 70.4% |
| 4qq1C03 | 2.40.128.240 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 41.0 | 3.88e-01 | 87.7% | 83.0% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.52 | 44.0 | 3.96e-01 | 93.2% | 71.0% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.52 | 44.0 | 4.56e-01 | 100.0% | 100.0% |
| 6i8xA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 47.0 | 3.68e-01 | 100.0% | 88.6% |
| 4azpA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 47.0 | 3.80e-01 | 100.0% | 91.0% |
| 2bolB02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 46.0 | 3.81e-01 | 100.0% | 78.1% |
| 2ewvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 46.0 | 4.12e-01 | 100.0% | 84.3% |
| 6c1zA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 47.0 | 3.77e-01 | 100.0% | 90.6% |
| 2v7sA00 | 3.30.2030.20 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.51 | 45.0 | 3.47e-01 | 100.0% | 43.2% |
| 2yj6A02 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.51 | 42.0 | 3.88e-01 | 91.8% | 78.9% |
| 5kzwA02 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.51 | 40.0 | 2.85e-01 | 86.3% | 88.4% |
| 2r78C00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 44.0 | 3.82e-01 | 98.6% | 82.8% |
| 3jvvA01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 45.0 | 4.05e-01 | 100.0% | 85.0% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2413833 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.61 | 46.0 | 3.81e-01 | 95.9% | 46.1% |
| 4338460 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.60 | 54.0 | 4.41e-01 | 100.0% | 68.4% |
| 3236394 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.60 | 52.0 | 4.63e-01 | 100.0% | 67.3% |
| 3537449 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.59 | 53.0 | 4.41e-01 | 100.0% | 69.8% |
| 4951147 | 881.4.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB | 0.59 | 45.0 | 3.83e-01 | 100.0% | 50.0% |
| 5003276 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.59 | 43.0 | 4.59e-01 | 93.2% | 86.2% |
| 184669 | 331.2.1.2 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › DUF2218 | 0.59 | 46.0 | 4.25e-01 | 100.0% | 64.6% |
| 4203743 | 3338.2.1.0 ↗ | a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB | 0.59 | 52.0 | 4.19e-01 | 100.0% | 75.2% |
| 3548690 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.59 | 44.0 | 4.43e-01 | 97.3% | 78.7% |
| 3388732 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.59 | 49.0 | 4.67e-01 | 100.0% | 77.6% |
| 3470353 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.59 | 53.0 | 4.36e-01 | 100.0% | 67.2% |
| 3250283 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.59 | 52.0 | 4.34e-01 | 100.0% | 69.2% |
| 3270933 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.58 | 52.0 | 4.34e-01 | 98.6% | 68.8% |
| 4975323 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.58 | 46.0 | 4.31e-01 | 100.0% | 70.0% |
| 4995145 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.58 | 46.0 | 4.43e-01 | 95.9% | 74.1% |
| 3487629 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 52.0 | 4.22e-01 | 100.0% | 69.6% |
| 4938317 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.57 | 47.0 | 4.52e-01 | 97.3% | 76.5% |
| 4975474 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.57 | 44.0 | 4.64e-01 | 95.9% | 92.3% |
| 3928306 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.57 | 51.0 | 4.15e-01 | 100.0% | 66.9% |
| 3938510 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.57 | 45.0 | 4.77e-01 | 95.9% | 96.9% |
| 3226791 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.57 | 51.0 | 4.26e-01 | 100.0% | 71.2% |
| 3973141 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.57 | 48.0 | 4.52e-01 | 100.0% | 75.6% |
| 3258907 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.57 | 49.0 | 4.15e-01 | 100.0% | 68.5% |
| 4870164 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.56 | 50.0 | 4.10e-01 | 98.6% | 72.5% |
| 3952435 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 51.0 | 3.79e-01 | 100.0% | 51.7% |
| 3615545 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.56 | 51.0 | 4.48e-01 | 100.0% | 78.1% |
| 3221377 | 9.11.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like | 0.56 | 45.0 | 4.05e-01 | 95.9% | 87.8% |
| 5053646 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.56 | 47.0 | 4.47e-01 | 100.0% | 78.8% |
| 4995431 | 5.1.4.14 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N | 0.56 | 42.0 | 2.66e-01 | 80.8% | 24.6% |
| 3249981 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.56 | 49.0 | 4.16e-01 | 100.0% | 69.6% |
| 3869277 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.56 | 50.0 | 3.72e-01 | 100.0% | 42.2% |
| 5052072 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.55 | 49.0 | 4.41e-01 | 100.0% | 79.0% |
| 3955307 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.55 | 49.0 | 3.72e-01 | 100.0% | 43.1% |
| 3628935 | 1181.1.1.0 ↗ | 0.55 | 39.0 | 4.18e-01 | 100.0% | 84.6% | |
| 4946040 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 42.0 | 2.79e-01 | 84.9% | 56.4% |
| 3291702 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.55 | 48.0 | 3.83e-01 | 100.0% | 64.7% |
| 3607579 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.55 | 48.0 | 4.12e-01 | 97.3% | 82.5% |
| 3783719 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 48.0 | 4.01e-01 | 100.0% | 58.3% |
| 3232913 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.54 | 45.0 | 3.39e-01 | 100.0% | 36.8% |
| 3875277 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.54 | 49.0 | 4.21e-01 | 100.0% | 67.8% |
| 169012 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.54 | 47.0 | 3.66e-01 | 100.0% | 74.7% |
| 3934185 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.54 | 46.0 | 3.78e-01 | 97.3% | 79.1% |
| 4963814 | 300.1.1.18 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle | 0.54 | 47.0 | 3.67e-01 | 100.0% | 75.8% |
| 5000881 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 47.0 | 3.69e-01 | 100.0% | 55.5% |
| 5011251 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.53 | 47.0 | 3.90e-01 | 100.0% | 81.5% |
| 3769483 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.53 | 47.0 | 3.94e-01 | 100.0% | 78.4% |
| 4978002 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 48.0 | 3.75e-01 | 100.0% | 57.3% |
| 3840141 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.52 | 45.0 | 4.39e-01 | 100.0% | 87.5% |
| 1725529 | 9.1.1.24 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 | 0.52 | 44.0 | 3.71e-01 | 95.9% | 81.5% |
| 3173088 | 223.2.1.19 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 | 0.52 | 47.0 | 3.63e-01 | 100.0% | 59.4% |
| 3628751 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.52 | 45.0 | 3.43e-01 | 100.0% | 42.7% |
| 3958491 | 3513.1.1.4 ↗ | a+b two layers › Putative lipoprotein LppA › Putative lipoprotein LppA › Putative lipoprotein LppA › PF27220 | 0.52 | 46.0 | 3.66e-01 | 100.0% | 53.3% |
| 3894563 | 9.1.1.24 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 | 0.51 | 47.0 | 3.86e-01 | 100.0% | 92.2% |
| 3578119 | 331.18.1.0 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc | 0.51 | 43.0 | 3.25e-01 | 100.0% | 37.8% |
| 3445390 | 305.2.1.0 ↗ | a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) | 0.51 | 44.0 | 3.85e-01 | 100.0% | 66.1% |
| 4136386 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 43.0 | 3.22e-01 | 100.0% | 39.4% |
| 4950402 | 881.4.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB | 0.50 | 44.0 | 3.69e-01 | 100.0% | 58.5% |