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BML_coassembly_scaffold_214_prodigal-single.1__X__X__00098
Bact-VirBML_coassembly_scaffold_214_prodigal-single.1__X__X__00098
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-172
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5xyiY00 | 3.30.70.3370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 39.0 | 4.43e-01 | 88.7% | 84.8% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.61 | 33.0 | 3.95e-01 | 70.4% | 75.8% |
| 1y7pB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.53 | 26.0 | 3.40e-01 | 80.3% | 82.5% |
| 2c5dC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 30.0 | 3.45e-01 | 88.0% | 76.9% |
| 5h5zA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 28.0 | 3.39e-01 | 88.0% | 81.8% |
| 4q9bA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 28.0 | 3.17e-01 | 70.4% | 69.3% |
| 1dn0D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 28.0 | 3.35e-01 | 87.3% | 79.8% |
| 1pfoA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.50 | 20.0 | 2.90e-01 | 70.4% | 86.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4979660 | 256.1.1.1 ↗ | a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease | 0.68 | 37.0 | 4.60e-01 | 84.5% | 87.1% |
| 4954449 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.55 | 30.0 | 3.49e-01 | 70.4% | 73.7% |
| 3617304 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 29.0 | 3.24e-01 | 70.4% | 63.6% |
| 4438073 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.54 | 27.0 | 3.46e-01 | 83.1% | 80.7% |
| 4966477 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.52 | 29.0 | 3.42e-01 | 83.8% | 78.9% |
D2
high
residues 179-345
Domain cluster:
rep: BML_08182015_1_5m_scaffold_19_prodigal-single.1__X__X__00393__D157-300
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5n9bA01 | 2.60.40.2160 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 | 0.69 | 38.0 | 4.11e-01 | 98.8% | 62.8% |
| 4zzfA02 | 2.60.40.4070 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 34.0 | 4.38e-01 | 97.6% | 86.5% |
| 5hccB02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.65 | 33.0 | 4.36e-01 | 97.6% | 87.4% |
| 7rskA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 38.0 | 4.67e-01 | 99.4% | 89.9% |
| 3gm8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 36.0 | 4.44e-01 | 100.0% | 86.7% |
| 4h4nA00 | 2.60.40.3750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 26.0 | 3.92e-01 | 92.8% | 95.2% |
| 4i3gA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 39.0 | 4.69e-01 | 97.6% | 89.5% |
| 2r5oA01 | 2.70.50.60 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain | 0.63 | 40.0 | 4.22e-01 | 100.0% | 69.5% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 20.0 | 3.02e-01 | 96.4% | 62.5% |
| 4eq3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 35.0 | 4.25e-01 | 100.0% | 84.3% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 34.0 | 4.37e-01 | 99.4% | 89.1% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 31.0 | 4.05e-01 | 100.0% | 84.4% |
| 6ecaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 31.0 | 4.02e-01 | 100.0% | 84.2% |
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 20.0 | 3.18e-01 | 96.4% | 73.0% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 32.0 | 4.02e-01 | 98.2% | 84.7% |
| 4jklA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 31.0 | 3.97e-01 | 98.8% | 85.3% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 36.0 | 4.27e-01 | 100.0% | 88.3% |
| 3bgaA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 34.0 | 4.11e-01 | 100.0% | 86.7% |
| 3hqiA01 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.59 | 35.0 | 3.87e-01 | 98.8% | 70.8% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 23.0 | 3.24e-01 | 94.6% | 73.3% |
| 6u7iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 27.0 | 3.45e-01 | 98.2% | 75.0% |
| 5odnC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 24.0 | 3.03e-01 | 97.6% | 60.8% |
| 3hn3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 30.0 | 3.71e-01 | 98.2% | 79.8% |
| 2j1vA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 29.0 | 3.16e-01 | 98.2% | 58.2% |
| 3m70A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 24.0 | 2.94e-01 | 98.2% | 63.2% |
| 2df7A02 | 2.60.120.660 | Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus | 0.53 | 33.0 | 3.61e-01 | 98.8% | 75.0% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.52 | 18.0 | 2.99e-01 | 89.8% | 100.0% |
| 2g1dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 26.0 | 3.30e-01 | 89.8% | 79.6% |
| 3r4rA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 33.0 | 3.50e-01 | 89.8% | 72.5% |
| 3rj2X00 | 2.60.120.1150 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 31.0 | 3.49e-01 | 100.0% | 75.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4927140 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.79 | 44.0 | 5.70e-01 | 98.2% | 94.7% |
| 4954628 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 41.0 | 5.12e-01 | 100.0% | 86.7% |
| 4927113 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 40.0 | 5.20e-01 | 97.6% | 95.8% |
| 5033330 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 42.0 | 5.08e-01 | 100.0% | 88.9% |
| 3724449 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.68 | 25.0 | 3.32e-01 | 89.8% | 60.0% |
| 3244649 | 10.10.1.0 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) | 0.68 | 27.0 | 3.82e-01 | 92.2% | 74.1% |
| 4968868 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 37.0 | 4.36e-01 | 100.0% | 76.5% |
| 3707121 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 24.0 | 3.49e-01 | 95.8% | 70.7% |
| 3958044 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 34.0 | 4.19e-01 | 98.2% | 81.0% |
| 4671861 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.65 | 37.0 | 4.65e-01 | 100.0% | 92.0% |
| 1837346 | 11.1.1.182 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3-like | 0.65 | 40.0 | 4.69e-01 | 97.6% | 87.2% |
| 3869344 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.64 | 31.0 | 3.63e-01 | 97.6% | 62.5% |
| 5009956 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 29.0 | 3.88e-01 | 97.6% | 78.9% |
| 5032255 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 24.0 | 3.58e-01 | 98.2% | 80.0% |
| 3587590 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.62 | 37.0 | 4.56e-01 | 96.4% | 93.3% |
| 3990927 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.62 | 31.0 | 4.20e-01 | 98.2% | 91.1% |
| 4149293 | 11.1.1.805 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 | 0.57 | 34.0 | 3.63e-01 | 97.6% | 66.2% |
| 5002890 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 28.0 | 3.48e-01 | 92.8% | 72.4% |
| 3689305 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 37.0 | 4.19e-01 | 98.8% | 86.4% |
| 5042375 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.57 | 26.0 | 3.80e-01 | 100.0% | 96.0% |
| 3658408 | 4325.1.1.13 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 | 0.57 | 25.0 | 3.55e-01 | 98.2% | 89.3% |
| 3545017 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 34.0 | 2.43e-01 | 97.0% | 19.8% |
| 3251425 | 11.1.5.62 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 | 0.55 | 32.0 | 4.05e-01 | 98.8% | 97.9% |
| 4115001 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.54 | 27.0 | 3.07e-01 | 91.6% | 60.8% |
| 5074611 | 2.26.1.1 ↗ | beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 | 0.54 | 25.0 | 3.53e-01 | 100.0% | 91.3% |
| 4032024 | 2.1.1.335 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29902 | 0.54 | 27.0 | 3.51e-01 | 100.0% | 84.2% |
| 4887934 | 10.3.1.8 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › Bc2l-C_N | 0.54 | 33.0 | 3.66e-01 | 98.2% | 75.2% |
| 5022439 | 304.156.1.3 ↗ | a+b two layers › Alpha-beta plaits › DNA translocase FtsK N-terminal domain › DNA translocase FtsK N-terminal domain › DUF5402 | 0.53 | 24.0 | 3.30e-01 | 86.8% | 82.4% |
| 5038686 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 28.0 | 3.28e-01 | 97.6% | 73.9% |
| 5050059 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 26.0 | 3.11e-01 | 100.0% | 71.3% |
| 4257138 | 11.1.1.581 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tag1_C | 0.51 | 41.0 | 4.25e-01 | 100.0% | 92.2% |
| 5040751 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 27.0 | 3.21e-01 | 98.2% | 74.5% |
| 3196169 | 310.3.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related | 0.51 | 30.0 | 3.81e-01 | 88.0% | 98.0% |
| 3438815 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.50 | 27.0 | 3.49e-01 | 95.2% | 97.6% |
| 3308868 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.50 | 31.0 | 3.79e-01 | 95.2% | 97.1% |