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BML_coassembly_scaffold_214_prodigal-single.1__X__X__00132
Bact-VirBML_coassembly_scaffold_214_prodigal-single.1__X__X__00132
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-106
Domain cluster:
rep: KC465899.1__AGE60376.1__X__00042__D22-103
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00267.28 | Porin_1 | 26.7 | 5.40e-06 | 100.0% | 21.1% |
| PF13609.13 best | Porin_4 | 45.9 | 9.90e-12 | 100.0% | 27.7% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vy8X00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.95 | 92.0 | 5.81e-01 | 100.0% | 27.6% |
| 1e54A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.91 | 87.0 | 5.59e-01 | 100.0% | 27.2% |
| 1bt9A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.77 | 71.0 | 4.65e-01 | 100.0% | 26.8% |
| 1af6A00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.72 | 66.0 | 4.13e-01 | 100.0% | 24.9% |
| 4fqeA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.70 | 56.0 | 4.40e-01 | 100.0% | 42.4% |
| 6r3wA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.68 | 53.0 | 4.23e-01 | 100.0% | 43.5% |
| 3wa5B00 | 2.60.120.1690 | Mainly Beta › Sandwich › Jelly Rolls › | 0.66 | 45.0 | 3.93e-01 | 97.6% | 47.6% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.66 | 60.0 | 4.49e-01 | 100.0% | 51.2% |
| 6fmeA03 | 2.20.220.10 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases | 0.64 | 41.0 | 4.64e-01 | 100.0% | 88.7% |
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.62 | 38.0 | 4.13e-01 | 81.2% | 74.6% |
| 1i78B00 | 2.40.128.90 | Mainly Beta › Beta Barrel › Lipocalin › OMPT-like | 0.60 | 56.0 | 3.78e-01 | 100.0% | 43.2% |
| 3kvnA02 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.60 | 52.0 | 3.62e-01 | 100.0% | 46.4% |
| 2fwvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.60 | 48.0 | 3.74e-01 | 100.0% | 39.5% |
| 3ia8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.59 | 50.0 | 4.06e-01 | 100.0% | 48.8% |
| 4c4vB02 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.58 | 54.0 | 3.44e-01 | 100.0% | 38.9% |
| 4mtuA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 48.0 | 4.00e-01 | 90.6% | 84.6% |
| 2gvhB02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 48.0 | 4.31e-01 | 90.6% | 91.5% |
| 3b7kB01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 49.0 | 4.08e-01 | 92.9% | 96.4% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.57 | 44.0 | 4.06e-01 | 83.5% | 86.1% |
| 2gvhC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 46.0 | 3.96e-01 | 90.6% | 79.4% |
| 2pzhA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 46.0 | 3.94e-01 | 89.4% | 88.8% |
| 4k02A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 46.0 | 4.00e-01 | 89.4% | 83.5% |
| 4ienA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 48.0 | 3.94e-01 | 95.3% | 88.3% |
| 1yliB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 45.0 | 3.80e-01 | 90.6% | 77.7% |
| 3e1eC00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 45.0 | 3.80e-01 | 90.6% | 74.5% |
| 3cygA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.54 | 45.0 | 4.08e-01 | 94.1% | 94.1% |
| 2v1oB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 44.0 | 3.68e-01 | 90.6% | 95.9% |
| 5jenA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.53 | 44.0 | 4.08e-01 | 92.9% | 95.5% |
| 4k00A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 44.0 | 3.80e-01 | 92.9% | 87.6% |
| 3ir3A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.53 | 43.0 | 3.78e-01 | 89.4% | 90.5% |
| 3ebyA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 45.0 | 3.79e-01 | 100.0% | 93.5% |
| 5azpA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.52 | 43.0 | 4.45e-01 | 91.8% | 96.3% |
| 4jphB00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.51 | 37.0 | 3.47e-01 | 77.6% | 83.8% |
| 3e29B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 43.0 | 3.67e-01 | 90.6% | 76.1% |
| 1sbkA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 42.0 | 3.63e-01 | 90.6% | 100.0% |
| 4e72A01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.51 | 42.0 | 3.79e-01 | 92.9% | 92.7% |
| 3hm0A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.51 | 43.0 | 3.75e-01 | 91.8% | 93.7% |
| 8enbA01 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.51 | 35.0 | 3.61e-01 | 72.9% | 100.0% |
| 2egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 42.0 | 3.68e-01 | 90.6% | 86.5% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 41.0 | 3.68e-01 | 89.4% | 87.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4527549 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.94 | 90.0 | 5.72e-01 | 100.0% | 26.7% |
| 4113659 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.93 | 89.0 | 5.58e-01 | 100.0% | 28.3% |
| 4069053 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.93 | 90.0 | 5.77e-01 | 100.0% | 28.7% |
| 4339977 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.93 | 88.0 | 5.51e-01 | 100.0% | 28.6% |
| 890 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.92 | 88.0 | 5.63e-01 | 100.0% | 27.3% |
| 4856841 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.91 | 86.0 | 5.53e-01 | 100.0% | 28.1% |
| 4044109 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.88 | 83.0 | 5.34e-01 | 100.0% | 27.4% |
| 4336262 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.88 | 83.0 | 5.25e-01 | 100.0% | 25.4% |
| None | — | 0.87 | 73.0 | 4.72e-01 | 100.0% | 23.1% | |
| 4241521 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.87 | 75.0 | 4.97e-01 | 100.0% | 25.2% |
| 4066147 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.85 | 81.0 | 5.19e-01 | 100.0% | 30.0% |
| 4539531 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.84 | 79.0 | 5.05e-01 | 100.0% | 25.6% |
| 4522601 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.81 | 75.0 | 4.84e-01 | 100.0% | 25.6% |
| 3978947 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.79 | 72.0 | 4.59e-01 | 100.0% | 21.9% |
| 4458963 | 5084.5.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 | 0.78 | 72.0 | 4.62e-01 | 100.0% | 23.8% |
| 4670451 | 5084.5.4.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 | 0.74 | 67.0 | 4.46e-01 | 100.0% | 33.3% |
| 3598820 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.74 | 52.0 | 3.55e-01 | 100.0% | 22.5% |
| 3965708 | 5084.5.4.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM | 0.72 | 65.0 | 4.69e-01 | 100.0% | 44.6% |
| 4265807 | 77.1.1.4 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Chitin_bind_4 | 0.70 | 44.0 | 4.83e-01 | 98.8% | 77.1% |
| None | — | 0.67 | 60.0 | 4.32e-01 | 100.0% | 44.1% | |
| 3840092 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.66 | 58.0 | 3.88e-01 | 100.0% | 31.3% |
| 3499326 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.64 | 54.0 | 3.72e-01 | 100.0% | 27.3% |
| 3631839 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.62 | 55.0 | 3.59e-01 | 100.0% | 30.9% |
| 3412551 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.61 | 39.0 | 4.09e-01 | 98.8% | 73.0% |
| 4470525 | 331.3.1.20 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C | 0.60 | 54.0 | 3.85e-01 | 100.0% | 50.6% |
| 3739446 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.60 | 48.0 | 4.65e-01 | 98.8% | 76.8% |
| 4643725 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.59 | 50.0 | 3.93e-01 | 100.0% | 65.7% |
| 3706274 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.59 | 48.0 | 3.77e-01 | 100.0% | 40.5% |
| 3240616 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 43.0 | 2.88e-01 | 78.8% | 27.0% |
| 6058 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.57 | 48.0 | 4.39e-01 | 90.6% | 94.7% |
| 4491556 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.57 | 49.0 | 3.71e-01 | 91.8% | 60.5% |
| 3277737 | 222.1.1.24 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA | 0.56 | 47.0 | 3.81e-01 | 91.8% | 78.1% |
| 224845 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.55 | 46.0 | 4.00e-01 | 89.4% | 83.5% |
| 3714239 | 7026.1.1.0 ↗ | beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 | 0.54 | 47.0 | 3.61e-01 | 100.0% | 53.3% |
| 3744610 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.54 | 45.0 | 3.52e-01 | 90.6% | 60.6% |
| 3781358 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.54 | 45.0 | 3.48e-01 | 90.6% | 59.0% |
| 4951358 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.53 | 44.0 | 3.79e-01 | 89.4% | 81.5% |
| 4981268 | 2484.1.1.59 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA | 0.52 | 42.0 | 3.00e-01 | 88.2% | 28.8% |
| 3972818 | 327.16.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin | 0.52 | 46.0 | 3.28e-01 | 100.0% | 49.3% |
| 3225806 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 45.0 | 4.04e-01 | 100.0% | 82.5% |
D2
medium
residues 107-269
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1e54A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.89 | 86.0 | 6.54e-01 | 100.0% | 57.7% |
| 2hdiA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.88 | 68.0 | 4.71e-01 | 79.1% | 35.0% |
| 6eheA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.85 | 82.0 | 6.46e-01 | 100.0% | 65.2% |
| 3efmA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.85 | 66.0 | 4.64e-01 | 79.1% | 40.4% |
| 1bh3A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.83 | 80.0 | 6.40e-01 | 100.0% | 62.6% |
| 2porA00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.81 | 77.0 | 6.13e-01 | 100.0% | 66.8% |
| 3v89A02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.79 | 61.0 | 4.06e-01 | 79.8% | 42.0% |
| 4gf4A00 | 2.40.160.180 | Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB | 0.75 | 65.0 | 5.20e-01 | 90.2% | 90.0% |
| 1af6A00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.75 | 70.0 | 5.07e-01 | 100.0% | 59.9% |
| 4epaA00 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.74 | 69.0 | 4.54e-01 | 99.4% | 85.0% |
| 5dl8A00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.74 | 71.0 | 5.15e-01 | 100.0% | 51.9% |
| 3jtyB01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.73 | 70.0 | 5.15e-01 | 100.0% | 54.4% |
| 1a0sP00 | 2.40.170.10 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type | 0.71 | 67.0 | 4.87e-01 | 100.0% | 60.0% |
| 3njtA01 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.71 | 67.0 | 5.36e-01 | 100.0% | 88.2% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.71 | 56.0 | 4.84e-01 | 81.6% | 71.5% |
| 2w16A03 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.71 | 67.0 | 4.45e-01 | 98.2% | 49.0% |
| 4bumX00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.70 | 67.0 | 5.43e-01 | 100.0% | 97.5% |
| 7vu0A01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.70 | 67.0 | 4.76e-01 | 100.0% | 64.4% |
| 1nqfA02 | 2.40.170.20 | Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain | 0.70 | 66.0 | 4.72e-01 | 98.8% | 41.2% |
| 4c00A04 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.69 | 59.0 | 4.69e-01 | 90.2% | 88.5% |
| 4c4vB02 | 2.40.160.50 | Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family | 0.69 | 59.0 | 4.47e-01 | 90.8% | 97.3% |
| 2wjqA00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.68 | 59.0 | 5.43e-01 | 92.0% | 99.0% |
| 4frxA01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.67 | 63.0 | 4.67e-01 | 100.0% | 66.8% |
| 2f1cX00 | 2.40.160.40 | Mainly Beta › Beta Barrel › Porin › monomeric porin ompg | 0.67 | 58.0 | 4.92e-01 | 90.2% | 81.7% |
| 4e1sA00 | 2.40.160.160 | Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain | 0.66 | 59.0 | 5.09e-01 | 94.5% | 87.2% |
| 1fw3A00 | 2.40.230.10 | Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 | 0.63 | 58.0 | 5.01e-01 | 98.8% | 97.2% |
| 3eniC00 | 2.50.10.10 | Mainly Beta › Clam › Bacteriochlorophyll-a Protein › Bacteriochlorophyll A | 0.63 | 48.0 | 3.64e-01 | 79.1% | 64.0% |
| 3dzmB00 | 2.40.160.70 | Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. | 0.62 | 44.0 | 4.05e-01 | 71.8% | 84.3% |
| 2qomB00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.60 | 54.0 | 4.57e-01 | 96.9% | 86.6% |
| 1uynX00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.57 | 51.0 | 4.30e-01 | 98.2% | 93.2% |
| 2lyxA00 | 3.10.450.390 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 | 0.56 | 31.0 | 4.01e-01 | 92.0% | 98.9% |
| 4r7kA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 43.0 | 4.34e-01 | 96.3% | 78.0% |
| 4ok4A02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 45.0 | 3.46e-01 | 84.0% | 72.3% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 47.0 | 4.10e-01 | 91.4% | 96.5% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 39.0 | 4.17e-01 | 96.3% | 81.2% |
| 4akrA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.54 | 40.0 | 4.18e-01 | 90.8% | 83.0% |
| 1nqnA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.54 | 37.0 | 4.26e-01 | 93.3% | 95.8% |
| 1i78B00 | 2.40.128.90 | Mainly Beta › Beta Barrel › Lipocalin › OMPT-like | 0.53 | 47.0 | 3.89e-01 | 95.1% | 99.0% |
| 1ygaA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 44.0 | 3.54e-01 | 93.3% | 85.7% |
| 3ty1A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 43.0 | 3.36e-01 | 94.5% | 67.4% |
| 7a0hA02 | 3.90.1150.210 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit | 0.50 | 43.0 | 4.20e-01 | 90.2% | 83.3% |
| 3dcdA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 43.0 | 3.57e-01 | 93.3% | 81.9% |
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.50 | 37.0 | 4.08e-01 | 93.9% | 95.3% |
| 2ciqA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.50 | 42.0 | 3.58e-01 | 92.6% | 85.0% |
ECOD (66)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3608121 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.85 | 64.0 | 5.34e-01 | 80.4% | 48.1% |
| 4066147 | 5084.5.1.11 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 | 0.83 | 80.0 | 6.10e-01 | 100.0% | 57.7% |
| 3512069 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.83 | 63.0 | 5.86e-01 | 80.4% | 64.0% |
| 4622159 | 5084.5.1.35 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_2 | 0.81 | 78.0 | 5.91e-01 | 100.0% | 55.9% |
| 3626881 | 5084.5.1.33 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel | 0.80 | 63.0 | 5.02e-01 | 81.0% | 46.8% |
| 4107065 | 11.1.1.11 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Usher | 0.80 | 61.0 | 4.28e-01 | 79.1% | 63.6% |
| 3451870 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.79 | 69.0 | 5.48e-01 | 91.4% | 97.4% |
| 3974137 | 5084.5.1.69 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › B-barrel_PelB_C | 0.79 | 62.0 | 4.86e-01 | 81.0% | 63.2% |
| 3706756 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.79 | 59.0 | 4.88e-01 | 80.4% | 45.8% |
| 4145268 | 5087.3.1.1 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht | 0.77 | 60.0 | 4.02e-01 | 79.8% | 46.5% |
| 3574877 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.76 | 56.0 | 4.46e-01 | 78.5% | 39.7% |
| 4083193 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.76 | 58.0 | 3.92e-01 | 78.5% | 32.6% |
| 4144216 | 5084.5.1.63 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Coleoptericin | 0.76 | 54.0 | 4.41e-01 | 77.3% | 41.7% |
| 4416793 | 5084.5.2.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB | 0.76 | 70.0 | 5.11e-01 | 97.5% | 95.1% |
| 4008277 | 5084.5.1.62 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF27458 | 0.76 | 71.0 | 5.57e-01 | 99.4% | 65.9% |
| 4646283 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.75 | 65.0 | 4.56e-01 | 89.0% | 85.6% |
| 3273993 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.75 | 66.0 | 5.54e-01 | 90.8% | 93.3% |
| 4208285 | 5084.5.2.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB | 0.75 | 71.0 | 5.89e-01 | 100.0% | 85.2% |
| 3976823 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.74 | 64.0 | 4.57e-01 | 89.6% | 86.1% |
| 4049663 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.74 | 64.0 | 4.54e-01 | 89.0% | 85.6% |
| 4515973 | 5084.5.1.32 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › LOC400499 | 0.74 | 51.0 | 3.51e-01 | 75.5% | 21.7% |
| 3645939 | 5084.5.1.33 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel | 0.74 | 65.0 | 5.46e-01 | 90.2% | 80.0% |
| 3574367 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.74 | 64.0 | 4.93e-01 | 90.8% | 86.8% |
| 3946102 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.74 | 63.0 | 4.54e-01 | 89.0% | 87.6% |
| 3705162 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.74 | 70.0 | 5.49e-01 | 98.8% | 85.2% |
| 3973457 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.73 | 63.0 | 4.41e-01 | 89.6% | 94.8% |
| 4315977 | 5084.5.1.37 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Attacin_N, Attacin_C | 0.73 | 63.0 | 5.27e-01 | 89.6% | 81.9% |
| 4268461 | 274.1.1.5 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor | 0.73 | 32.0 | 4.43e-01 | 85.9% | 80.0% |
| 3965263 | 274.1.1.5 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor | 0.72 | 32.0 | 4.57e-01 | 85.3% | 86.3% |
| 1806543 | 5084.5.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PgaA_barrel | 0.72 | 63.0 | 5.07e-01 | 90.8% | 82.8% |
| 3838130 | 5084.5.1.25 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › HP_OMP_2 | 0.72 | 68.0 | 4.78e-01 | 100.0% | 63.0% |
| 4618904 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.71 | 68.0 | 5.01e-01 | 100.0% | 95.3% |
| 4603160 | 5084.5.4.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › YaiO | 0.71 | 62.0 | 5.36e-01 | 90.2% | 98.3% |
| 3399621 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.71 | 68.0 | 5.38e-01 | 100.0% | 87.7% |
| 4655696 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.71 | 55.0 | 3.78e-01 | 79.8% | 39.2% |
| 3839454 | 5084.5.1.25 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › HP_OMP_2 | 0.71 | 68.0 | 4.83e-01 | 100.0% | 56.0% |
| 3839274 | 5084.5.1.25 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › HP_OMP_2 | 0.70 | 67.0 | 4.57e-01 | 100.0% | 50.9% |
| 3967717 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.69 | 58.0 | 4.69e-01 | 90.2% | 89.3% |
| 3941832 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.69 | 65.0 | 4.81e-01 | 100.0% | 97.6% |
| 3644755 | 5084.5.1.23 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › TOC159_MAD | 0.68 | 64.0 | 5.03e-01 | 98.8% | 89.8% |
| 4880357 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.68 | 49.0 | 5.41e-01 | 88.3% | 89.6% |
| 4670451 | 5084.5.4.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 | 0.68 | 62.0 | 4.85e-01 | 97.5% | 85.2% |
| 4005087 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.68 | 59.0 | 5.19e-01 | 92.0% | 91.8% |
| 3611705 | 5084.5.1.2 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 | 0.67 | 57.0 | 4.31e-01 | 89.6% | 70.0% |
| 3594654 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.67 | 58.0 | 4.36e-01 | 91.4% | 96.8% |
| 3293131 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.67 | 62.0 | 5.33e-01 | 99.4% | 86.1% |
| 3388794 | 71.2.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like | 0.66 | 48.0 | 4.22e-01 | 74.8% | 57.5% |
| 3977722 | 5084.5.1.8 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM | 0.66 | 57.0 | 5.20e-01 | 91.4% | 99.0% |
| 4937593 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.65 | 39.0 | 3.55e-01 | 74.8% | 44.0% |
| 4367390 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.65 | 61.0 | 4.30e-01 | 99.4% | 40.2% |
| 4604561 | 5084.5.1.5 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB | 0.64 | 60.0 | 4.48e-01 | 99.4% | 77.9% |
| 4411442 | 5084.10.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD | 0.63 | 53.0 | 3.61e-01 | 88.3% | 79.3% |
| 3625846 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.63 | 44.0 | 3.74e-01 | 78.5% | 45.4% |
| 3980013 | 5084.8.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher | 0.63 | 58.0 | 4.19e-01 | 97.5% | 45.5% |
| 4490044 | 5084.3.1.1 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter | 0.59 | 54.0 | 4.46e-01 | 99.4% | 83.5% |
| 3838722 | 5084.3.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › PF29188 | 0.58 | 52.0 | 4.13e-01 | 95.7% | 89.5% |
| 3964265 | 5084.1.1.43 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Autotransporter | 0.57 | 49.0 | 5.18e-01 | 98.8% | 100.0% |
| 4403206 | 4051.1.1.2 ↗ | a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A | 0.57 | 38.0 | 3.92e-01 | 90.8% | 70.3% |
| 5018057 | 9.13.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like | 0.57 | 37.0 | 4.22e-01 | 96.9% | 87.0% |
| 3824851 | 5084.5.1.43 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › PF30985 | 0.56 | 48.0 | 4.85e-01 | 99.4% | 90.3% |
| 5080405 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.56 | 39.0 | 3.91e-01 | 70.6% | 92.1% |
| 4556083 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.54 | 38.0 | 4.24e-01 | 92.6% | 90.0% |
| 3250326 | 1100.1.1.1 ↗ | beta meanders › TIP41-like protein › TIP41-like protein › TIP41-like protein › TIP41 | 0.54 | 45.0 | 3.84e-01 | 87.1% | 85.1% |
| 3514135 | 5084.1.1.19 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › BCSC_C | 0.53 | 39.0 | 3.94e-01 | 76.1% | 92.7% |
| 3270049 | 331.3.1.17 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt | 0.52 | 47.0 | 4.39e-01 | 95.1% | 84.6% |
| 4207604 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.50 | 42.0 | 3.29e-01 | 92.0% | 85.9% |