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BML_coassembly_scaffold_214_prodigal-single.1__X__X__00240
Bact-VirBML_coassembly_scaffold_214_prodigal-single.1__X__X__00240
Identity
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-82
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.70 | 48.0 | 3.63e-01 | 71.1% | 91.5% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.67 | 41.0 | 5.03e-01 | 80.3% | 97.9% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.65 | 55.0 | 5.19e-01 | 100.0% | 77.2% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.64 | 41.0 | 4.55e-01 | 75.0% | 83.1% |
| 4fzwA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.64 | 40.0 | 4.49e-01 | 76.3% | 82.8% |
| 2hw5A02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.63 | 40.0 | 4.42e-01 | 75.0% | 84.2% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.63 | 43.0 | 4.12e-01 | 86.8% | 62.1% |
| 4jylA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.62 | 39.0 | 4.51e-01 | 71.1% | 95.9% |
| 5kbwB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.62 | 46.0 | 3.61e-01 | 80.3% | 68.4% |
| 2qvaA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.61 | 41.0 | 4.79e-01 | 85.5% | 98.1% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 42.0 | 4.11e-01 | 86.8% | 63.5% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 37.0 | 4.15e-01 | 75.0% | 79.3% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.60 | 41.0 | 3.56e-01 | 82.9% | 45.7% |
| 8sppA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 52.0 | 3.35e-01 | 98.7% | 66.2% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.59 | 43.0 | 3.90e-01 | 89.5% | 55.7% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.59 | 42.0 | 4.25e-01 | 90.8% | 74.0% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 36.0 | 3.90e-01 | 85.5% | 75.4% |
| 3bxwA03 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.56 | 31.0 | 3.47e-01 | 86.8% | 70.9% |
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 39.0 | 4.21e-01 | 76.3% | 86.4% |
| 5b1aH00 | 1.10.10.140 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Cytochrome c oxidase, subunit VIb | 0.55 | 39.0 | 3.91e-01 | 97.4% | 73.4% |
| 1v4gA01 | 6.10.140.800 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 37.0 | 3.85e-01 | 88.2% | 78.3% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 42.0 | 4.25e-01 | 86.8% | 83.1% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.53 | 44.0 | 3.61e-01 | 97.4% | 79.7% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.53 | 38.0 | 3.92e-01 | 80.3% | 82.4% |
| 1m56C01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 36.0 | 3.75e-01 | 86.8% | 78.3% |
| 3egiA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 39.0 | 2.91e-01 | 80.3% | 76.4% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.52 | 37.0 | 3.58e-01 | 85.5% | 65.2% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 39.0 | 4.04e-01 | 90.8% | 85.9% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.52 | 37.0 | 3.96e-01 | 100.0% | 95.1% |
| 3umcD02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.51 | 42.0 | 4.18e-01 | 100.0% | 91.0% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.51 | 42.0 | 4.04e-01 | 96.1% | 89.1% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 38.0 | 3.80e-01 | 81.6% | 76.9% |
| 1ekjA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.51 | 42.0 | 3.14e-01 | 94.7% | 61.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946099 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.74 | 49.0 | 4.82e-01 | 71.1% | 62.7% |
| 4026159 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.66 | 42.0 | 5.00e-01 | 81.6% | 98.0% |
| 4100663 | 7575.1.1.11 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › PF31181 | 0.65 | 49.0 | 3.24e-01 | 81.6% | 67.6% |
| 3506234 | 5043.1.1.15 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › Med14 | 0.65 | 45.0 | 4.09e-01 | 73.7% | 58.1% |
| 5046057 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 41.0 | 4.36e-01 | 96.1% | 78.5% |
| 222846 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.62 | 42.0 | 3.99e-01 | 90.8% | 58.1% |
| 3180581 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.62 | 40.0 | 3.90e-01 | 96.1% | 58.8% |
| 3927560 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.60 | 41.0 | 4.59e-01 | 96.1% | 90.0% |
| 3672772 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.60 | 39.0 | 4.03e-01 | 98.7% | 71.4% |
| 4968652 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.60 | 40.0 | 3.65e-01 | 90.8% | 52.0% |
| 3596786 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 48.0 | 3.03e-01 | 90.8% | 39.8% |
| 4955751 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.59 | 40.0 | 3.83e-01 | 86.8% | 58.9% |
| 3989252 | 6132.1.1.1 ↗ | alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix_N | 0.59 | 41.0 | 4.41e-01 | 80.3% | 84.6% |
| 3724838 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.59 | 42.0 | 4.39e-01 | 80.3% | 81.4% |
| 2323867 | 4970.1.1.1 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B | 0.57 | 41.0 | 4.59e-01 | 75.0% | 96.7% |
| 3952510 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.57 | 41.0 | 4.19e-01 | 86.8% | 78.7% |
| 3943344 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.56 | 38.0 | 3.06e-01 | 98.7% | 37.1% |
| 3587564 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.56 | 37.0 | 3.70e-01 | 77.6% | 64.6% |
| 3962057 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.56 | 41.0 | 4.15e-01 | 100.0% | 78.5% |
| 4572664 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.56 | 44.0 | 4.62e-01 | 100.0% | 95.7% |
| 4935068 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.55 | 41.0 | 4.19e-01 | 90.8% | 81.3% |
| 4405928 | 5086.1.1.196 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX | 0.54 | 39.0 | 4.03e-01 | 78.9% | 80.0% |
| 4992111 | 101.1.2.21 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress | 0.54 | 38.0 | 3.17e-01 | 72.4% | 72.6% |
| 3293917 | 616.1.1.28 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › RNA_pol_Rpb1_1 | 0.54 | 40.0 | 3.41e-01 | 77.6% | 51.7% |
| 3241303 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.53 | 38.0 | 3.76e-01 | 80.3% | 71.2% |