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BML_coassembly_scaffold_214_prodigal-single.1__X__X__00312

Bact-Vir

BML_coassembly_scaffold_214_prodigal-single.1__X__X__00312

Identity

Kingdom:
phage

Quality

66.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-113
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 4.40e-01 87.0% 98.5%
3rtyB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 39.0 3.73e-01 96.7% 62.4%
4f3lB02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 41.0 3.70e-01 97.8% 56.6%
4jg5A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 3.85e-01 97.8% 78.9%
1ztuA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 39.0 3.31e-01 95.7% 45.7%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 35.0 3.52e-01 82.6% 64.9%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 37.0 3.60e-01 83.7% 66.7%
4hh2B03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.66e-01 94.6% 71.0%
1yp2D01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 40.0 2.94e-01 88.0% 96.2%
2oolA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.49e-01 96.7% 63.6%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.66e-01 96.7% 86.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3905596 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 3.79e-01 89.1% 69.4%
3297021 219.1.1.107 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF674 0.56 38.0 2.78e-01 70.7% 52.0%
3787695 7516.1.1.1 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.54 46.0 3.18e-01 93.5% 89.8%
5062838 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 39.0 3.87e-01 97.8% 70.0%
3277663 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 35.0 3.35e-01 98.9% 57.1%
5082938 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 39.0 3.54e-01 94.6% 57.6%
4980705 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 39.0 3.47e-01 96.7% 54.6%
3998596 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 37.0 3.48e-01 96.7% 57.5%
3919718 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.53 41.0 3.41e-01 96.7% 45.9%
3779572 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 40.0 3.37e-01 98.9% 46.1%
2796929 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.52 37.0 3.45e-01 97.8% 58.1%
4950257 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 39.0 3.57e-01 97.8% 57.7%
None — 0.52 42.0 3.51e-01 98.9% 50.0%
5051877 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 38.0 3.47e-01 97.8% 55.4%
4958963 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.52 39.0 3.52e-01 95.7% 57.6%
3625374 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.52e-01 97.8% 59.2%
4980704 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.65e-01 97.8% 65.5%
4980696 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 38.0 3.60e-01 96.7% 63.5%
1716852 223.1.1.12 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 0.51 36.0 3.39e-01 96.7% 59.3%
3973937 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 38.0 3.39e-01 96.7% 52.1%
5047292 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 37.0 3.57e-01 95.7% 64.5%
3592890 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.51 44.0 3.05e-01 96.7% 77.6%
5074990 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 37.0 3.39e-01 96.7% 55.4%
3484133 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 38.0 3.47e-01 98.9% 58.4%
3972417 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.51 37.0 3.58e-01 96.7% 65.5%
3489982 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 38.0 2.89e-01 98.9% 32.1%
5062840 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 38.0 3.34e-01 96.7% 52.9%
3377325 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.50 37.0 3.24e-01 95.7% 49.7%
3184485 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.50 45.0 4.28e-01 98.9% 93.5%
4410088 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.50 40.0 3.45e-01 94.6% 54.5%
D2 medium residues 122-215
PDB