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BML_coassembly_scaffold_234_prodigal-single.1__X__X__00277
Bact-VirBML_coassembly_scaffold_234_prodigal-single.1__X__X__00277
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-58
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8igrI01 | 2.40.270.10 | Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 | 0.70 | 50.0 | 3.51e-01 | 75.9% | 26.7% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 47.0 | 4.80e-01 | 72.4% | 78.9% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 44.0 | 4.30e-01 | 70.7% | 65.2% |
| 1t07A00 | 1.10.3880.10 | Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX | 0.63 | 48.0 | 4.38e-01 | 86.2% | 91.4% |
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 48.0 | 3.96e-01 | 93.1% | 84.3% |
| 2gutA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.62 | 43.0 | 3.98e-01 | 74.1% | 61.0% |
| 1kyoF00 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.59 | 46.0 | 4.38e-01 | 91.4% | 83.8% |
| 3a98B01 | 6.10.10.90 | Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › | 0.59 | 42.0 | 3.78e-01 | 75.9% | 69.1% |
| 1szhA01 | 1.10.150.360 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.59 | 44.0 | 4.31e-01 | 82.8% | 100.0% |
| 4uqfG01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.57 | 38.0 | 3.94e-01 | 74.1% | 76.9% |
| 2l35A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.55 | 37.0 | 3.66e-01 | 70.7% | 66.7% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 40.0 | 3.78e-01 | 91.4% | 69.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937584 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.65 | 46.0 | 4.35e-01 | 77.6% | 66.7% |
| 4528425 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.65 | 53.0 | 4.53e-01 | 94.8% | 64.0% |
| 3673670 | 639.2.1.4 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › Ovate | 0.62 | 41.0 | 4.06e-01 | 70.7% | 63.1% |
| 3432185 | 101.11.1.2 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Ovate | 0.61 | 42.0 | 4.07e-01 | 72.4% | 66.2% |
| 5069251 | 7602.1.1.1 ↗ | a/b three-layered sandwiches › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › LarA_C | 0.61 | 50.0 | 3.54e-01 | 100.0% | 46.4% |
| 3595352 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.59 | 40.0 | 3.90e-01 | 72.4% | 69.2% |
| 3311071 | 5063.1.1.13 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Myb_DNA-bind_3 | 0.58 | 47.0 | 4.85e-01 | 98.3% | 100.0% |
| 4092989 | 7061.1.1.0 ↗ | few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module | 0.57 | 42.0 | 4.00e-01 | 84.5% | 72.0% |
| 3956989 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.57 | 42.0 | 4.28e-01 | 84.5% | 96.4% |
| 3770592 | 192.15.1.145 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Xin | 0.56 | 37.0 | 3.57e-01 | 72.4% | 57.1% |
| 3290399 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 43.0 | 3.29e-01 | 89.7% | 67.6% |
D2
medium
residues 59-183
Domain cluster:
rep: MK867354.2__QFG06520.1__SSCSM1_256__00256__D56-155
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.64 | 42.0 | 4.31e-01 | 80.0% | 67.7% |
| 1rznA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 45.0 | 4.23e-01 | 82.4% | 64.7% |
| 3kyfA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 36.0 | 3.73e-01 | 82.4% | 75.4% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4357158 | 2008.1.1.13 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RecU | 0.62 | 47.0 | 4.15e-01 | 80.8% | 56.0% |
| 3958925 | 4052.1.1.0 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like | 0.59 | 40.0 | 4.67e-01 | 75.2% | 100.0% |
| 3839405 | 2008.1.1.161 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7149 | 0.58 | 45.0 | 3.85e-01 | 82.4% | 65.0% |
| 3280135 | 4052.1.1.0 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like | 0.56 | 42.0 | 4.54e-01 | 79.2% | 99.0% |
| 5051523 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 35.0 | 3.62e-01 | 83.2% | 65.8% |
| 4955059 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.53 | 39.0 | 3.99e-01 | 91.2% | 77.6% |
| 3200218 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 37.0 | 3.11e-01 | 82.4% | 43.3% |
| 3204633 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 39.0 | 3.10e-01 | 84.0% | 40.0% |
| 4669938 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.50 | 34.0 | 3.60e-01 | 84.8% | 78.2% |