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BML_coassembly_scaffold_25_prodigal-single.1__X__X__00027
Bact-VirBML_coassembly_scaffold_25_prodigal-single.1__X__X__00027
Identity
- Kingdom:
- phage
Quality
78.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-49
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.86 | 62.0 | 5.61e-01 | 76.6% | 58.1% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.83 | 62.0 | 4.55e-01 | 78.7% | 60.2% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.83 | 60.0 | 4.47e-01 | 76.6% | 33.0% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.81 | 54.0 | 5.97e-01 | 74.5% | 91.7% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 57.0 | 5.26e-01 | 76.6% | 60.0% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.79 | 54.0 | 5.19e-01 | 76.6% | 63.0% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.78 | 60.0 | 5.60e-01 | 93.6% | 66.7% |
| 1yfmA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.76 | 54.0 | 3.97e-01 | 76.6% | 28.6% |
| 2n7zA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.75 | 51.0 | 3.91e-01 | 70.2% | 31.1% |
| 1y74A00 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.75 | 54.0 | 5.13e-01 | 83.0% | 64.9% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.75 | 56.0 | 4.79e-01 | 83.0% | 50.7% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.73 | 52.0 | 4.46e-01 | 78.7% | 46.8% |
| 4bf9A02 | 1.20.225.30 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Dihydrouridine synthase, C-terminal recognition domain | 0.72 | 52.0 | 4.49e-01 | 76.6% | 87.7% |
| 2feaA02 | 3.90.1470.20 | Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › | 0.72 | 57.0 | 4.52e-01 | 91.5% | 42.9% |
| 5uh5D02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.71 | 62.0 | 4.46e-01 | 100.0% | 80.4% |
| 8fbnB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 60.0 | 3.83e-01 | 93.6% | 52.7% |
| 4in3B00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 63.0 | 3.49e-01 | 100.0% | 15.3% |
| 4qlxB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.71 | 50.0 | 3.26e-01 | 76.6% | 17.6% |
| 4a9aA01 | 6.10.140.1070 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 57.0 | 4.29e-01 | 89.4% | 100.0% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.70 | 49.0 | 4.89e-01 | 76.6% | 72.0% |
| 2hh7A00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.70 | 59.0 | 4.81e-01 | 93.6% | 84.7% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 53.0 | 4.52e-01 | 85.1% | 65.4% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.69 | 54.0 | 4.93e-01 | 89.4% | 65.1% |
| 4cpgA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.66 | 47.0 | 4.24e-01 | 78.7% | 58.0% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 43.0 | 4.31e-01 | 72.3% | 91.7% |
| 3qnmA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 49.0 | 4.07e-01 | 93.6% | 63.3% |
| 1vfrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 47.0 | 3.02e-01 | 100.0% | 81.1% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3802502 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.93 | 69.0 | 6.08e-01 | 83.0% | 56.9% |
| 3486312 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.89 | 65.0 | 4.63e-01 | 76.6% | 30.3% |
| 3662970 | 101.1.1.426 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SAGA-Tad1 | 0.87 | 64.0 | 5.69e-01 | 80.9% | 56.9% |
| 4971062 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.86 | 64.0 | 5.13e-01 | 78.7% | 43.5% |
| 4004355 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.85 | 62.0 | 4.63e-01 | 76.6% | 34.3% |
| 3491875 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.85 | 63.0 | 5.72e-01 | 76.6% | 60.0% |
| 3266283 | 509.1.1.13 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 | 0.82 | 63.0 | 5.39e-01 | 87.2% | 54.3% |
| 3477387 | 103.1.1.122 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DMAP_binding | 0.82 | 58.0 | 6.16e-01 | 76.6% | 87.5% |
| 5052036 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.81 | 59.0 | 4.96e-01 | 76.6% | 48.0% |
| 3631184 | 3151.1.1.0 ↗ | alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 | 0.81 | 57.0 | 5.82e-01 | 76.6% | 77.8% |
| 3664414 | 509.1.1.13 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SAGA-Tad1 | 0.81 | 61.0 | 5.44e-01 | 87.2% | 58.5% |
| 3730259 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.81 | 60.0 | 5.41e-01 | 87.2% | 58.5% |
| 3737171 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.80 | 59.0 | 5.41e-01 | 80.9% | 61.7% |
| 3438800 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.80 | 61.0 | 5.33e-01 | 87.2% | 55.7% |
| 3809254 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.79 | 62.0 | 5.53e-01 | 87.2% | 61.5% |
| 3737108 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.78 | 57.0 | 5.18e-01 | 87.2% | 56.9% |
| 3821967 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.78 | 61.0 | 5.20e-01 | 87.2% | 53.3% |
| 3696546 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.78 | 56.0 | 5.10e-01 | 83.0% | 56.9% |
| 5054079 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.76 | 65.0 | 5.32e-01 | 91.5% | 67.5% |
| 3822871 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.74 | 61.0 | 5.63e-01 | 93.6% | 71.7% |
| 5065508 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.73 | 64.0 | 4.90e-01 | 95.7% | 75.0% |
| 4946898 | 375.1.9.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase | 0.72 | 57.0 | 4.81e-01 | 85.1% | 53.3% |
| 5074552 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.72 | 65.0 | 4.81e-01 | 100.0% | 69.6% |
| 3410594 | 4177.1.1.6 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg | 0.72 | 55.0 | 3.59e-01 | 85.1% | 19.5% |
| 3337903 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.72 | 60.0 | 5.44e-01 | 95.7% | 70.8% |
| 3442087 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.72 | 59.0 | 5.43e-01 | 95.7% | 71.9% |
| 3815976 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.71 | 58.0 | 5.39e-01 | 95.7% | 73.3% |
| 4024170 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.68 | 56.0 | 5.24e-01 | 95.7% | 73.3% |
| 3974573 | 5086.1.1.86 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YBHG | 0.65 | 49.0 | 3.63e-01 | 85.1% | 30.8% |