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BML_coassembly_scaffold_25_prodigal-single.1__X__X__00051
Bact-VirBML_coassembly_scaffold_25_prodigal-single.1__X__X__00051
Identity
- Kingdom:
- phage
Quality
70.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-58
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 53.0 | 5.72e-01 | 73.1% | 93.0% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.76 | 53.0 | 5.48e-01 | 73.1% | 89.6% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.76 | 52.0 | 4.65e-01 | 71.2% | 54.9% |
| 3rkoG00 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.72 | 56.0 | 4.59e-01 | 88.5% | 64.0% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 47.0 | 4.22e-01 | 71.2% | 56.3% |
| 3ezuA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.67 | 54.0 | 3.77e-01 | 92.3% | 45.1% |
| 3gt5A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.67 | 52.0 | 3.10e-01 | 86.5% | 24.8% |
| 3n2oA04 | 1.10.287.3440 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 44.0 | 4.46e-01 | 73.1% | 69.2% |
| 4ecgA00 | 1.20.1420.20 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › M75 peptidase, HXXE motif | 0.66 | 51.0 | 3.12e-01 | 88.5% | 81.5% |
| 4fnvA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.65 | 56.0 | 3.29e-01 | 94.2% | 21.0% |
| 4houB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.65 | 46.0 | 3.05e-01 | 80.8% | 16.9% |
| 2afaA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.62 | 53.0 | 3.12e-01 | 94.2% | 24.3% |
| 1cpyA02 | 1.10.287.410 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 43.0 | 4.04e-01 | 76.9% | 59.7% |
| 1zoyD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.62 | 49.0 | 4.07e-01 | 92.3% | 76.5% |
| 1dc1A02 | 1.10.238.90 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Restriction endonuclease BsobI, helical domain | 0.52 | 42.0 | 3.62e-01 | 94.2% | 60.2% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3712340 | 7516.1.1.32 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › GlcNAc | 0.83 | 58.0 | 3.41e-01 | 75.0% | 10.9% |
| 3319093 | 109.4.1.1441 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_11, TPR_16 | 0.80 | 55.0 | 3.31e-01 | 71.2% | 11.8% |
| 3650977 | 109.4.1.1300 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_16, TPR_19 | 0.79 | 54.0 | 3.02e-01 | 71.2% | 6.4% |
| 5001984 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.78 | 55.0 | 5.61e-01 | 75.0% | 88.0% |
| 3587957 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.75 | 52.0 | 3.00e-01 | 73.1% | 7.3% |
| 4958320 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.73 | 51.0 | 3.66e-01 | 75.0% | 27.7% |
| 3722383 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.73 | 52.0 | 3.05e-01 | 76.9% | 10.4% |
| 3654553 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.70 | 49.0 | 3.13e-01 | 73.1% | 15.0% |
| 4201121 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.70 | 49.0 | 4.75e-01 | 75.0% | 71.7% |
| 3953386 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.69 | 48.0 | 3.37e-01 | 73.1% | 95.3% |
| 3448305 | 109.4.1.3188 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_8, TPR_11, TPR_16, TPR_19 | 0.66 | 52.0 | 3.66e-01 | 86.5% | 44.2% |
| 3859118 | 109.4.1.1452 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_Maestro, HEAT_Maestro_2 | 0.64 | 54.0 | 3.23e-01 | 100.0% | 41.7% |
| 3922067 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.63 | 53.0 | 3.37e-01 | 100.0% | 32.3% |
| 5047510 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 53.0 | 4.29e-01 | 100.0% | 84.8% |
| 3499614 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 50.0 | 3.12e-01 | 100.0% | 60.0% |
| 3693121 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.61 | 52.0 | 4.10e-01 | 98.1% | 95.5% |
| 3594073 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 51.0 | 3.12e-01 | 100.0% | 31.9% |
| 3374025 | 109.4.1.1272 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif | 0.58 | 48.0 | 3.22e-01 | 98.1% | 48.7% |
| 3611437 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.57 | 39.0 | 2.87e-01 | 75.0% | 26.2% |
| 4879882 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.55 | 43.0 | 4.01e-01 | 86.5% | 75.8% |
| 4928775 | 2002.3.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase | 0.53 | 40.0 | 2.77e-01 | 86.5% | 32.5% |