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BML_coassembly_scaffold_25_prodigal-single.1__X__X__00165
Bact-VirBML_coassembly_scaffold_25_prodigal-single.1__X__X__00165
Identity
- Kingdom:
- phage
Quality
63.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 290-411
D2
medium
residues 5-101
Domain cluster:
rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00496__D4-100
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hr9A02 | 3.30.210.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 3 › DNA polymerase, thumb domain | 0.60 | 33.0 | 3.76e-01 | 77.3% | 73.9% |
| 1d2dA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.54 | 28.0 | 3.50e-01 | 70.1% | 85.7% |
| 1knvB00 | 3.40.91.10 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.53 | 37.0 | 2.73e-01 | 73.2% | 81.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4988955 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.71 | 31.0 | 3.90e-01 | 97.9% | 66.7% |
| 5010554 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.69 | 32.0 | 3.89e-01 | 96.9% | 66.2% |
| 4263371 | 3433.1.1.0 ↗ | a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain | 0.58 | 22.0 | 3.16e-01 | 94.8% | 73.3% |
| 5026630 | 4246.1.1.0 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit | 0.58 | 39.0 | 2.78e-01 | 70.1% | 28.0% |
| 4042477 | 4354.1.1.1 ↗ | a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF | 0.57 | 39.0 | 3.41e-01 | 70.1% | 72.7% |
| 4154388 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 36.0 | 3.95e-01 | 99.0% | 80.0% |
| 4073171 | 304.120.1.11 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › UreE_C | 0.54 | 31.0 | 3.20e-01 | 79.4% | 56.8% |
D3
medium
residues 102-235
Domain cluster:
rep: ALT_09252017_20_scaffold_16_prodigal-single.1__X__X__00221__D133-236
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26926.1 best | Phage_T4_rIIB | 135.2 | 4.20e-39 | 100.0% | 32.1% |