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BML_coassembly_scaffold_25_prodigal-single.1__X__X__00230
Bact-VirBML_coassembly_scaffold_25_prodigal-single.1__X__X__00230
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-191
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 44.1 | 4.00e-11 | 59.9% | 94.7% |
| PF07728.21 | AAA_5 | 22.8 | 1.10e-04 | 54.5% | 65.5% |
D2
high
residues 196-250
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ye6A01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.79 | 69.0 | 5.64e-01 | 100.0% | 55.8% |
| 2fnaA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.77 | 68.0 | 6.13e-01 | 100.0% | 72.4% |
| 5m7oA03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.75 | 65.0 | 5.64e-01 | 100.0% | 83.9% |
| 4cxfA01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.69 | 52.0 | 4.59e-01 | 85.5% | 70.1% |
| 4bofA02 | 1.10.3930.10 | Mainly Alpha › Orthogonal Bundle › Pentein › Arginine deiminase | 0.67 | 57.0 | 4.96e-01 | 96.4% | 78.2% |
| 3hv0A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.62 | 48.0 | 3.85e-01 | 85.5% | 44.6% |
| 2i7aA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 50.0 | 3.78e-01 | 100.0% | 51.6% |
| 4ojmX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.61 | 45.0 | 3.74e-01 | 83.6% | 47.6% |
| 1szhA01 | 1.10.150.360 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.59 | 42.0 | 3.98e-01 | 74.5% | 73.8% |
| 3llkA02 | 1.20.120.310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain | 0.54 | 40.0 | 3.11e-01 | 85.5% | 38.5% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5025683 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.82 | 64.0 | 6.46e-01 | 85.5% | 90.9% |
| 5083301 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.80 | 70.0 | 6.50e-01 | 100.0% | 81.4% |
| 3639254 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 64.0 | 5.65e-01 | 100.0% | 78.8% |
| 4022079 | 2004.1.1.366 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N | 0.74 | 64.0 | 4.07e-01 | 100.0% | 23.4% |
| 4152869 | 6056.1.1.0 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like | 0.71 | 58.0 | 5.29e-01 | 98.2% | 93.8% |
| 4614513 | 6056.1.1.0 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like | 0.69 | 59.0 | 5.27e-01 | 100.0% | 100.0% |
| 4976851 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.69 | 52.0 | 4.90e-01 | 85.5% | 85.7% |
| 5018194 | 4307.1.1.41 ↗ | alpha duplicates or obligate multimers › EB1 dimerisation domain-like › EB1 dimerisation domain-like › EB1 dimerisation domain-like › DUF1016_N | 0.69 | 59.0 | 4.47e-01 | 100.0% | 40.0% |
| 5001051 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.67 | 49.0 | 4.87e-01 | 81.8% | 93.3% |
D3
high
residues 263-412