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BML_coassembly_scaffold_25_prodigal-single.1__X__X__00248
Bact-VirBML_coassembly_scaffold_25_prodigal-single.1__X__X__00248
Identity
- Kingdom:
- phage
Quality
68.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 68-151
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.85 | 61.0 | 6.88e-01 | 82.1% | 95.4% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.83 | 58.0 | 6.13e-01 | 79.8% | 81.1% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.82 | 59.0 | 6.18e-01 | 81.0% | 80.5% |
| 1uurA01 | 1.20.58.240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 | 0.80 | 61.0 | 5.53e-01 | 79.8% | 83.6% |
| 3uo2B02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.79 | 61.0 | 6.15e-01 | 81.0% | 86.9% |
| 1fpoC02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.77 | 60.0 | 5.84e-01 | 82.1% | 83.5% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.76 | 55.0 | 5.19e-01 | 76.2% | 79.2% |
| 4fxdA04 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.75 | 59.0 | 4.77e-01 | 83.3% | 87.6% |
| 3l39A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.74 | 67.0 | 5.04e-01 | 100.0% | 94.5% |
| 3rklA00 | 6.10.140.1640 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 58.0 | 6.00e-01 | 94.0% | 88.7% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 54.0 | 5.00e-01 | 78.6% | 79.2% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.71 | 51.0 | 4.56e-01 | 75.0% | 64.1% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 52.0 | 4.79e-01 | 91.7% | 63.0% |
| 1u89A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.68 | 61.0 | 5.18e-01 | 100.0% | 83.5% |
| 2x6hA01 | 1.25.40.70 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Phosphatidylinositol 3-kinase, accessory domain (PIK) | 0.67 | 49.0 | 3.72e-01 | 88.1% | 34.4% |
| 3fhnA01 | 6.10.280.210 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain A | 0.66 | 49.0 | 3.81e-01 | 78.6% | 38.6% |
| 4qndA00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.65 | 50.0 | 4.76e-01 | 81.0% | 71.1% |
| 3g9gA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.63 | 48.0 | 3.44e-01 | 82.1% | 61.2% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 46.0 | 4.28e-01 | 79.8% | 69.1% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.62 | 49.0 | 4.76e-01 | 92.9% | 75.3% |
| 2i39B00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.62 | 40.0 | 3.61e-01 | 79.8% | 46.2% |
| 3lmfA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 50.0 | 4.62e-01 | 90.5% | 100.0% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 47.0 | 3.87e-01 | 84.5% | 74.0% |
| 1bgfA00 | 1.10.532.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain | 0.59 | 46.0 | 4.09e-01 | 85.7% | 61.3% |
| 2f2bA00 | 1.20.1080.10 | Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. | 0.58 | 52.0 | 3.72e-01 | 98.8% | 73.1% |
| 4o8sA02 | 1.20.58.1790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain | 0.56 | 41.0 | 3.78e-01 | 77.4% | 87.9% |
| 6ygiB01 | 1.10.4090.10 | Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus | 0.55 | 49.0 | 4.13e-01 | 100.0% | 79.5% |
| 1ji0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 3.10e-01 | 98.8% | 32.2% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4445940 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.87 | 61.0 | 6.59e-01 | 79.8% | 83.6% |
| 5029994 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.87 | 60.0 | 6.82e-01 | 72.6% | 92.3% |
| 1436803 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.86 | 60.0 | 6.46e-01 | 86.9% | 83.3% |
| 5029513 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.85 | 61.0 | 6.67e-01 | 75.0% | 88.6% |
| 4055485 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.84 | 63.0 | 6.87e-01 | 84.5% | 92.9% |
| 5064973 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.83 | 60.0 | 6.53e-01 | 75.0% | 88.6% |
| 3619957 | 5055.1.1.0 ↗ | extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel | 0.83 | 62.0 | 6.23e-01 | 81.0% | 76.5% |
| 3585987 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.83 | 62.0 | 6.54e-01 | 81.0% | 86.7% |
| 4934026 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.82 | 58.0 | 6.60e-01 | 85.7% | 95.4% |
| 5057676 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.81 | 59.0 | 6.27e-01 | 82.1% | 84.0% |
| 4936868 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.81 | 59.0 | 6.07e-01 | 82.1% | 78.8% |
| 3397045 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.81 | 62.0 | 5.05e-01 | 79.8% | 50.3% |
| 5077884 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.78 | 58.0 | 5.97e-01 | 77.4% | 83.7% |
| 3785092 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 54.0 | 4.34e-01 | 75.0% | 66.3% |
| 4950112 | 604.5.1.1 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU_div | 0.75 | 68.0 | 5.06e-01 | 100.0% | 90.7% |
| 5027495 | 192.12.1.0 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM | 0.74 | 61.0 | 6.17e-01 | 88.1% | 90.6% |
| 5055919 | 159.1.1.4 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › PRA-PH | 0.74 | 57.0 | 5.53e-01 | 95.2% | 74.4% |
| 3173971 | 630.1.1.2 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF29521 | 0.73 | 60.0 | 5.07e-01 | 86.9% | 97.8% |
| 4013888 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 51.0 | 4.19e-01 | 76.2% | 65.8% |
| 3989031 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.71 | 50.0 | 3.60e-01 | 75.0% | 37.6% |
| 3780807 | 174.1.1.52 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF27925 | 0.70 | 63.0 | 5.46e-01 | 100.0% | 86.2% |
| 3703087 | 150.1.1.104 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Piezo_THU9_anchor | 0.70 | 61.0 | 4.78e-01 | 97.6% | 67.8% |
| 3720559 | 633.12.1.0 ↗ | alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like | 0.69 | 57.0 | 4.67e-01 | 100.0% | 51.4% |
| 3812703 | 3758.1.1.7 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › BPS1 | 0.68 | 56.0 | 4.11e-01 | 89.3% | 69.1% |
| 3542652 | 633.23.1.34 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 | 0.68 | 60.0 | 4.83e-01 | 100.0% | 82.4% |
| 3708688 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.68 | 52.0 | 5.18e-01 | 91.7% | 78.8% |
| 3957878 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.68 | 58.0 | 4.74e-01 | 90.5% | 53.6% |
| 4021431 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.67 | 59.0 | 5.00e-01 | 98.8% | 95.7% |
| 3647621 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.66 | 59.0 | 4.50e-01 | 98.8% | 65.6% |
| 3486497 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.66 | 59.0 | 5.08e-01 | 98.8% | 98.5% |
| 5018187 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.66 | 47.0 | 5.23e-01 | 81.0% | 98.5% |
| 3263522 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.65 | 50.0 | 3.80e-01 | 83.3% | 42.9% |
| 3177239 | 101.1.2.34 ↗ | alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding | 0.64 | 48.0 | 4.14e-01 | 90.5% | 50.4% |
| 3264612 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.64 | 51.0 | 4.02e-01 | 88.1% | 43.3% |
| 3924136 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.63 | 55.0 | 4.55e-01 | 98.8% | 80.6% |
| 4950248 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.63 | 44.0 | 4.28e-01 | 79.8% | 65.3% |
| 4857248 | 5064.1.1.1 ↗ | alpha bundles › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › PsaL | 0.60 | 49.0 | 4.21e-01 | 88.1% | 71.4% |
| 3997689 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.60 | 53.0 | 3.53e-01 | 98.8% | 75.9% |
| 4028663 | 545.1.2.0 ↗ | alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain | 0.60 | 46.0 | 4.11e-01 | 84.5% | 59.1% |
| 4111534 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.56 | 40.0 | 2.79e-01 | 77.4% | 24.7% |
| 5014771 | 7516.1.1.79 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 | 0.53 | 45.0 | 3.03e-01 | 100.0% | 53.7% |
| 3412831 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.53 | 43.0 | 3.71e-01 | 95.2% | 83.3% |
| 3921512 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.50 | 39.0 | 2.80e-01 | 84.5% | 59.2% |