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BML_coassembly_scaffold_25_prodigal-single.1__X__X__00328

Bact-Vir

BML_coassembly_scaffold_25_prodigal-single.1__X__X__00328

Identity

Kingdom:
phage

Quality

69.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-82
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v4aA01 1.10.4050.10 Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE 0.71 43.0 3.71e-01 100.0% 39.4%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.69 43.0 3.41e-01 100.0% 32.4%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.69 45.0 4.99e-01 100.0% 84.2%
6al9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.67 45.0 4.16e-01 100.0% 54.9%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.65 42.0 3.86e-01 100.0% 51.1%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.63 48.0 3.13e-01 81.7% 27.4%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.63 46.0 4.75e-01 100.0% 80.9%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 43.0 3.71e-01 73.2% 45.5%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.62 43.0 3.77e-01 100.0% 47.7%
4i43B02 3.30.43.40 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain 0.62 41.0 3.46e-01 100.0% 43.0%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.61 37.0 3.67e-01 100.0% 56.6%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 47.0 4.96e-01 100.0% 93.5%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.60 43.0 4.26e-01 94.4% 70.1%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 42.0 3.95e-01 77.5% 60.2%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.59 43.0 3.80e-01 100.0% 52.9%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.59 35.0 2.55e-01 100.0% 19.9%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 40.0 3.82e-01 71.8% 82.1%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.58 42.0 4.50e-01 98.6% 95.0%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.58 45.0 4.23e-01 84.5% 94.4%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 44.0 4.01e-01 81.7% 81.1%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.57 43.0 4.22e-01 100.0% 73.1%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 41.0 3.26e-01 100.0% 37.8%
2e9xB02 1.20.58.1020 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 38.0 3.34e-01 100.0% 45.9%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.56 40.0 3.93e-01 100.0% 67.5%
7wivA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 51.0 3.32e-01 100.0% 63.5%
2hh7A00 1.20.58.1000 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer 0.56 39.0 3.72e-01 73.2% 92.9%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 47.0 4.06e-01 100.0% 61.1%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 39.0 3.64e-01 74.6% 88.5%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 37.0 3.55e-01 88.7% 61.2%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.53 44.0 3.67e-01 94.4% 69.7%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 3.23e-01 71.8% 86.4%
1zhcA00 6.10.280.50 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 3.65e-01 74.6% 100.0%
2rd9B01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 48.0 3.55e-01 100.0% 61.7%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.52 41.0 3.90e-01 100.0% 70.9%
3nkuA00 1.10.357.170 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.52 45.0 3.34e-01 94.4% 54.0%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.52 42.0 3.96e-01 100.0% 72.9%
1yj8A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 43.0 3.43e-01 95.8% 50.6%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.52 38.0 4.05e-01 98.6% 91.8%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.52 40.0 3.50e-01 90.1% 84.7%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.52 46.0 4.60e-01 100.0% 98.6%
2aplA02 1.10.8.340 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.51 38.0 3.72e-01 81.7% 84.0%
5yk4A03 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.51 44.0 3.56e-01 100.0% 49.0%
4me9B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 45.0 3.39e-01 100.0% 38.7%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 36.0 3.61e-01 74.6% 74.0%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 37.0 3.10e-01 77.5% 61.8%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982105 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.71 48.0 4.72e-01 100.0% 65.3%
3929377 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 48.0 4.47e-01 100.0% 58.8%
3187172 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 48.0 4.89e-01 94.4% 74.3%
4034220 632.2.1.5 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF1542 0.67 42.0 4.31e-01 100.0% 65.7%
4636911 4974.1.1.2 alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain › Cas13a_endoribonuclease 0.66 55.0 4.45e-01 100.0% 97.4%
3271988 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.66 46.0 4.64e-01 85.9% 72.6%
3307741 109.4.1.1494 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26700 0.64 45.0 3.07e-01 100.0% 21.4%
4994917 3834.1.1.25 alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121 0.64 44.0 2.99e-01 100.0% 20.8%
4238922 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.63 47.0 3.62e-01 95.8% 34.5%
3201508 101.1.17.34 alpha arrays › HTH › HTH › FF domain › Sds3 0.63 43.0 4.19e-01 100.0% 63.7%
3920252 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.62 49.0 3.70e-01 100.0% 34.9%
3408346 633.24.1.2 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 0.61 46.0 4.59e-01 100.0% 77.3%
4681537 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.60 40.0 3.56e-01 100.0% 48.0%
4033261 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.59 41.0 3.32e-01 100.0% 39.5%
4945496 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.59 40.0 3.96e-01 70.4% 93.3%
4260426 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.59 39.0 3.52e-01 100.0% 49.0%
3246285 109.27.1.0 alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.59 36.0 3.60e-01 94.4% 60.0%
3711883 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.57 39.0 2.81e-01 71.8% 84.7%
4203116 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.57 39.0 4.06e-01 70.4% 80.0%
5045487 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.57 38.0 3.15e-01 73.2% 39.2%
3789792 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.57 46.0 4.18e-01 100.0% 65.3%
3919989 192.5.1.19 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › OCIA 0.57 43.0 4.20e-01 98.6% 72.5%
4164998 166.1.1.1 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.57 40.0 3.61e-01 74.6% 59.0%
3744818 101.1.1.213 alpha arrays › HTH › HTH › Three-helical HTH › HRI2_3H 0.57 40.0 4.02e-01 95.8% 72.0%
3494941 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.57 39.0 4.02e-01 71.8% 81.5%
3273401 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.56 43.0 3.10e-01 100.0% 28.8%
3602632 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.56 41.0 3.12e-01 100.0% 30.8%
3270696 604.7.1.1 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA 0.56 45.0 3.95e-01 100.0% 59.0%
5028214 3457.1.1.1 alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 0.55 45.0 3.42e-01 98.6% 95.0%
4045132 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.54 43.0 3.75e-01 100.0% 56.4%
5027499 142.3.1.0 alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain 0.54 44.0 4.39e-01 88.7% 85.3%
4274954 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.54 44.0 4.21e-01 97.2% 77.5%
3738042 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.54 36.0 3.63e-01 95.8% 70.0%
4059164 6155.1.1.8 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › Pyr4-TMTC 0.54 43.0 3.83e-01 100.0% 61.0%
3843 604.14.1.1 alpha bundles › Spectrin repeat-like › PPK N-terminal domain-like › PPK N-terminal domain-like › PP_kinase_N 0.53 36.0 3.29e-01 98.6% 52.1%
3243299 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.53 40.0 4.11e-01 100.0% 84.3%
5029680 3745.1.1.1 alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.53 44.0 2.97e-01 100.0% 67.3%
5004570 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.52 37.0 3.71e-01 100.0% 72.0%
4467337 304.41.1.1 a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.52 37.0 3.01e-01 74.6% 47.9%
4638470 101.1.2.311 alpha arrays › HTH › HTH › winged helix domain › RNA12 0.52 36.0 2.75e-01 71.8% 91.8%
4180833 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.52 39.0 2.66e-01 80.3% 70.4%
3190824 166.1.1.0 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.52 44.0 4.32e-01 97.2% 85.3%
3659915 192.7.1.45 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Na_sulph_symp 0.52 42.0 4.17e-01 98.6% 82.7%
3201572 4177.1.1.7 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Pil1 0.52 41.0 2.79e-01 100.0% 23.9%
3177803 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.52 37.0 3.40e-01 76.1% 60.0%
4193968 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.51 37.0 3.37e-01 77.5% 75.0%
3627573 192.17.1.10 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › eIF-3c_N 0.51 36.0 3.11e-01 74.6% 46.1%