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BML_coassembly_scaffold_25_prodigal-single.1__X__X__00362
Bact-VirBML_coassembly_scaffold_25_prodigal-single.1__X__X__00362
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-79
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wgrA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.66 | 38.0 | 3.82e-01 | 94.9% | 53.7% |
| 2qyzA01 | 3.30.1490.160 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains | 0.64 | 40.0 | 4.65e-01 | 91.1% | 94.3% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.60 | 39.0 | 4.20e-01 | 96.2% | 78.8% |
| 3ig5A02 | 3.30.590.50 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.54 | 41.0 | 2.70e-01 | 83.5% | 70.9% |
| 1kvkA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.53 | 36.0 | 3.05e-01 | 73.4% | 61.5% |
| 1zc1A01 | 2.40.40.50 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › Ubiquitin fusion degradation protein UFD1, N-terminal domain | 0.51 | 34.0 | 3.22e-01 | 97.5% | 54.4% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 30.0 | 3.33e-01 | 96.2% | 78.0% |
| 2gwcA00 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.50 | 42.0 | 2.64e-01 | 93.7% | 42.2% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3475306 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.65 | 38.0 | 3.47e-01 | 97.5% | 41.8% |
| 3801678 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 45.0 | 3.97e-01 | 100.0% | 51.2% |
| 3501521 | 170.2.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain | 0.55 | 38.0 | 3.87e-01 | 77.2% | 73.8% |
| 3400530 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 46.0 | 3.94e-01 | 98.7% | 58.5% |
| 5040887 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 3.22e-01 | 93.7% | 42.0% |
| 3635936 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.53 | 44.0 | 4.36e-01 | 93.7% | 98.8% |
| None | — | 0.52 | 44.0 | 2.71e-01 | 100.0% | 30.0% | |
| 3985237 | 144.1.1.9 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › DUF1615 | 0.51 | 40.0 | 3.93e-01 | 87.3% | 100.0% |
| 3291344 | 3536.1.1.0 ↗ | a+b complex topology › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains › Lmo1499 protein N-terminal domains | 0.51 | 39.0 | 3.46e-01 | 83.5% | 67.5% |
| 4008918 | 632.3.1.13 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › DUF1615 | 0.51 | 39.0 | 3.91e-01 | 87.3% | 100.0% |
| 4460922 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.50 | 32.0 | 3.22e-01 | 100.0% | 62.5% |
D2
medium
residues 80-178
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ojaA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.62 | 41.0 | 4.03e-01 | 73.7% | 61.5% |
| 4owpB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.59 | 41.0 | 3.53e-01 | 100.0% | 42.8% |
| 6f35A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.57 | 38.0 | 2.90e-01 | 100.0% | 30.4% |
| 4oteA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 37.0 | 3.72e-01 | 75.8% | 65.4% |
| 4gotA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 39.0 | 3.83e-01 | 75.8% | 67.6% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 35.0 | 3.54e-01 | 89.9% | 61.5% |
| 4q5tA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 37.0 | 3.60e-01 | 75.8% | 62.7% |
| 4ntlA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 37.0 | 3.69e-01 | 75.8% | 67.0% |
| 3cq4A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 35.0 | 2.66e-01 | 100.0% | 28.4% |
| 2qytA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 37.0 | 3.05e-01 | 100.0% | 39.2% |
| 1lp8A01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.53 | 45.0 | 3.74e-01 | 96.0% | 61.9% |
| 1xs5A02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 37.0 | 3.69e-01 | 79.8% | 68.9% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 42.0 | 3.70e-01 | 100.0% | 59.2% |
| 2bkyX00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.51 | 34.0 | 3.56e-01 | 100.0% | 77.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3509951 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.56 | 39.0 | 3.02e-01 | 72.7% | 66.0% |
| 3614493 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 44.0 | 3.14e-01 | 86.9% | 41.9% |
| 3607934 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 42.0 | 3.51e-01 | 86.9% | 46.4% |
| 1523563 | 7523.1.1.13 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lipoprotein_9 | 0.54 | 37.0 | 3.48e-01 | 75.8% | 56.6% |
| 3945442 | 2008.1.1.50 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YqaJ | 0.53 | 38.0 | 2.99e-01 | 83.8% | 35.6% |
| 3308368 | 2006.1.6.10 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Med25_VWA | 0.53 | 42.0 | 3.27e-01 | 90.9% | 37.8% |
| 4397425 | 2008.1.1.6 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 | 0.52 | 37.0 | 3.66e-01 | 75.8% | 68.8% |
| 3838389 | 2003.1.7.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig | 0.51 | 36.0 | 3.12e-01 | 100.0% | 43.6% |
| 3815039 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.51 | 37.0 | 3.16e-01 | 98.0% | 44.6% |