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BML_coassembly_scaffold_25_prodigal-single.1__X__X__00388

Bact-Vir

BML_coassembly_scaffold_25_prodigal-single.1__X__X__00388

Identity

Kingdom:
phage

Quality

63.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 416-516
PDB
D2 medium residues 39-115
PDB
Domain cluster: representative
D3 medium residues 116-237
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5lpeB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.70 37.0 4.22e-01 80.3% 67.7%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 39.0 4.37e-01 79.5% 73.1%
2oq5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.64 38.0 4.14e-01 80.3% 69.2%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 29.0 3.66e-01 82.0% 70.8%
1ntpA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 37.0 4.08e-01 80.3% 68.9%
5dj7A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 37.0 3.97e-01 79.5% 66.7%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 42.0 4.25e-01 100.0% 67.7%
3h7tA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.63 37.0 3.92e-01 80.3% 64.0%
7pzoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 37.0 4.17e-01 80.3% 75.0%
1ym0A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 39.0 4.09e-01 80.3% 67.9%
1a5iA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 39.0 4.01e-01 81.1% 65.3%
4lk4A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 38.0 4.19e-01 80.3% 77.1%
1faxA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 37.0 4.00e-01 80.3% 69.2%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 38.0 4.04e-01 80.3% 69.1%
1ekbB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 39.0 4.13e-01 80.3% 71.6%
3dfjA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 38.0 4.00e-01 80.3% 67.3%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 36.0 3.88e-01 80.3% 66.4%
4h4fA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 37.0 3.94e-01 80.3% 67.3%
5f8zA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 38.0 3.99e-01 79.5% 67.9%
3beuA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 37.0 4.07e-01 80.3% 74.7%
5eokA05 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 38.0 3.04e-01 80.3% 33.5%
1eq9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 37.0 3.98e-01 80.3% 70.5%
1ltoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 36.0 3.86e-01 79.5% 67.0%
2r0lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 39.0 4.02e-01 81.1% 69.0%
1fiwA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 40.0 4.06e-01 80.3% 68.3%
1orfA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 38.0 4.05e-01 80.3% 73.3%
2b9lA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 38.0 3.54e-01 80.3% 51.0%
2f91A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 38.0 3.92e-01 80.3% 69.9%
5lhrA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 38.0 3.91e-01 82.8% 69.2%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 37.0 3.96e-01 80.3% 73.8%
4kkdB04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 38.0 3.85e-01 80.3% 66.9%
2hlcA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 36.0 3.91e-01 80.3% 76.0%
2aiqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 34.0 3.55e-01 81.1% 64.6%
1a7sA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 33.0 3.57e-01 81.1% 70.5%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.54 40.0 3.97e-01 77.0% 95.2%
2xxlA03 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 38.0 3.74e-01 81.1% 68.5%
3govB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 38.0 3.86e-01 81.1% 74.0%
1qf6A02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.53 36.0 3.83e-01 82.8% 79.2%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 38.0 3.99e-01 100.0% 85.3%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 34.0 3.66e-01 86.1% 76.6%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.51 40.0 4.21e-01 98.4% 93.6%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.51 43.0 3.64e-01 92.6% 85.7%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 31.0 3.37e-01 83.6% 71.2%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.50 46.0 3.60e-01 100.0% 69.0%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5007131 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.74 47.0 5.32e-01 100.0% 83.2%
5040464 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 47.0 5.22e-01 100.0% 81.1%
4237287 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.71 45.0 4.56e-01 82.0% 64.2%
5062289 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.71 45.0 5.09e-01 100.0% 82.1%
3397229 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.70 40.0 3.21e-01 80.3% 29.6%
3967199 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 45.0 4.87e-01 81.1% 76.2%
3784272 1.1.7.102 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.70 54.0 5.47e-01 82.0% 81.7%
2407461 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.68 44.0 4.34e-01 82.0% 61.1%
4057590 1.1.5.86 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 0.68 45.0 4.30e-01 82.0% 58.6%
1344807 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.67 37.0 3.02e-01 81.1% 29.2%
4287081 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 43.0 4.31e-01 81.1% 63.2%
3981111 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.65 43.0 3.99e-01 81.1% 52.9%
3748285 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.64 37.0 3.30e-01 80.3% 38.3%
3402456 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.64 37.0 3.17e-01 80.3% 35.9%
4791571 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 37.0 3.76e-01 80.3% 56.8%
4189243 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.63 41.0 4.08e-01 82.0% 62.3%
3412938 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 38.0 3.03e-01 80.3% 30.7%
3397483 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 40.0 2.99e-01 80.3% 27.5%
None 0.63 38.0 3.01e-01 80.3% 31.1%
None 0.62 39.0 2.96e-01 80.3% 27.8%
4189226 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 38.0 3.06e-01 80.3% 31.7%
3498508 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 39.0 3.12e-01 80.3% 32.2%
3565221 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 39.0 3.02e-01 80.3% 29.2%
3412772 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 37.0 2.92e-01 80.3% 29.4%
4640974 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 42.0 4.27e-01 82.0% 70.0%
3481883 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 40.0 3.87e-01 81.1% 57.8%
3199664 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 43.0 4.19e-01 82.8% 66.2%
3893667 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 39.0 3.02e-01 80.3% 29.4%
3411832 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 39.0 3.01e-01 80.3% 29.6%
3760665 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 37.0 2.91e-01 80.3% 28.5%
3398355 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 38.0 3.02e-01 80.3% 30.2%
3913731 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 39.0 2.94e-01 80.3% 28.0%
3880678 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 48.0 4.69e-01 82.0% 82.3%
3399484 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 38.0 3.07e-01 80.3% 33.0%
4532479 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.61 37.0 2.93e-01 80.3% 30.4%
3230604 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 38.0 2.95e-01 79.5% 28.9%
3406384 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 38.0 2.97e-01 80.3% 30.4%
5080510 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.60 34.0 3.77e-01 72.1% 69.5%
3752007 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 37.0 2.93e-01 80.3% 31.5%
3393622 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 40.0 3.24e-01 80.3% 35.7%
3568406 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 38.0 2.95e-01 80.3% 28.7%
3409619 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 38.0 2.99e-01 80.3% 30.4%
3411403 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 37.0 2.85e-01 80.3% 27.8%
3398044 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 37.0 2.89e-01 80.3% 28.6%
3390860 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 38.0 2.94e-01 80.3% 29.9%
3413957 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.58 38.0 2.94e-01 80.3% 31.0%
3409759 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.58 39.0 3.01e-01 80.3% 31.5%
3768334 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.58 39.0 3.03e-01 80.3% 31.3%
3390369 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.57 38.0 2.94e-01 80.3% 31.2%
3615541 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 39.0 3.95e-01 81.1% 69.6%
4211423 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 38.0 2.96e-01 80.3% 31.2%
3406252 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.56 38.0 3.00e-01 81.1% 32.4%
5080512 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 49.0 3.61e-01 100.0% 35.8%
3587074 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.55 42.0 4.42e-01 100.0% 89.1%
5004559 1.1.13.75 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube 0.55 42.0 4.09e-01 80.3% 91.9%
3724417 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 41.0 3.87e-01 82.0% 64.0%
3693412 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 45.0 4.54e-01 87.7% 94.2%
4014437 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 46.0 4.24e-01 91.8% 90.3%
3390498 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 36.0 2.87e-01 81.1% 32.3%
3407383 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.53 39.0 3.05e-01 80.3% 35.9%
3390372 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.52 36.0 2.98e-01 81.1% 36.7%
3407680 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.51 36.0 2.89e-01 80.3% 34.0%
4202541 1.1.9.23 beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 0.50 41.0 4.26e-01 100.0% 93.9%
3719492 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.50 36.0 2.77e-01 75.4% 45.5%