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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00025

Bact-Vir

BML_coassembly_scaffold_35_prodigal-single.1__X__X__00025

Identity

Kingdom:
phage

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-75
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.83 63.0 4.84e-01 80.6% 45.9%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 72.0 5.75e-01 95.2% 61.5%
1yvuA02 2.30.340.10 Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily 0.81 65.0 5.59e-01 85.5% 95.7%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.81 59.0 5.57e-01 77.4% 97.3%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.80 58.0 5.31e-01 75.8% 91.1%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.80 70.0 5.20e-01 95.2% 62.8%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.79 58.0 5.43e-01 77.4% 85.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 53.0 5.31e-01 71.0% 90.3%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.77 60.0 5.08e-01 85.5% 74.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 5.38e-01 80.6% 89.3%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 5.64e-01 85.5% 95.8%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.74 62.0 5.68e-01 100.0% 71.4%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.73 64.0 4.54e-01 100.0% 62.2%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.73 64.0 5.47e-01 96.8% 87.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.18e-01 100.0% 58.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 61.0 6.28e-01 93.5% 100.0%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.88e-01 96.8% 94.6%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.71 59.0 5.26e-01 93.5% 91.1%
1jqpA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 60.0 4.08e-01 96.8% 95.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 57.0 5.58e-01 100.0% 81.8%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 52.0 4.69e-01 88.7% 90.8%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.64 56.0 4.98e-01 95.2% 89.5%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.92e-01 85.5% 87.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.60e-01 88.7% 76.9%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.61 38.0 4.11e-01 88.7% 79.6%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 52.0 5.00e-01 96.8% 87.1%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.39e-01 71.0% 100.0%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.49e-01 100.0% 84.4%
4paaA05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.57 42.0 3.96e-01 80.6% 78.5%
1q47A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.77e-01 90.3% 39.5%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.57 46.0 2.93e-01 91.9% 36.6%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 3.39e-01 87.1% 44.4%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.57 48.0 4.36e-01 98.4% 91.0%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.75e-01 90.3% 39.6%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.95e-01 93.5% 42.7%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 44.0 3.50e-01 90.3% 84.6%
1olzA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.77e-01 93.5% 32.8%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.06e-01 90.3% 82.8%
3oqcA02 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.55 46.0 3.24e-01 95.2% 86.3%
1v5vA03 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.55 42.0 3.99e-01 83.9% 70.7%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.55 42.0 3.69e-01 83.9% 76.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 4.09e-01 90.3% 89.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.15e-01 100.0% 74.7%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.52 35.0 3.67e-01 72.6% 92.9%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.52 41.0 3.19e-01 93.5% 54.7%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.52 35.0 3.78e-01 80.6% 97.8%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.46e-01 100.0% 55.7%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3583597 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.90 79.0 6.85e-01 93.5% 67.8%
3496040 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.88 81.0 5.83e-01 100.0% 64.4%
3617741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 79.0 5.37e-01 100.0% 56.6%
3621303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 74.0 5.65e-01 91.9% 65.4%
5017637 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.86 70.0 7.43e-01 88.7% 98.2%
3991229 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.85 78.0 5.60e-01 100.0% 69.1%
3511007 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.85 63.0 4.99e-01 79.0% 53.3%
3553413 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.85 65.0 5.74e-01 80.6% 71.8%
3768116 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.84 64.0 4.30e-01 80.6% 28.4%
4974669 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.84 68.0 5.96e-01 87.1% 60.0%
3584109 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 76.0 5.65e-01 98.4% 80.6%
647 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.83 63.0 4.84e-01 80.6% 45.9%
4957888 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.83 71.0 7.22e-01 93.5% 95.0%
4427477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 65.0 5.56e-01 83.9% 66.3%
3572423 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.82 73.0 5.74e-01 95.2% 60.0%
3495220 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.82 75.0 5.46e-01 100.0% 70.6%
4942163 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 60.0 5.88e-01 75.8% 80.0%
3523144 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.82 75.0 5.18e-01 100.0% 60.5%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 58.0 4.05e-01 74.2% 32.2%
5081247 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 58.0 5.90e-01 74.2% 81.7%
3470175 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.81 63.0 5.70e-01 82.3% 95.0%
2527304 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.81 62.0 6.30e-01 82.3% 96.7%
1175108 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.79 61.0 4.96e-01 82.3% 67.0%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 62.0 5.93e-01 100.0% 74.3%
3837995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 58.0 6.11e-01 79.0% 94.5%
5055039 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.75 57.0 4.34e-01 80.6% 48.6%
3279470 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.75 55.0 4.90e-01 79.0% 68.9%
3277860 4.1.1.368 beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.75 56.0 5.58e-01 80.6% 84.6%
4983006 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 55.0 5.45e-01 77.4% 81.5%
4069543 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 59.0 5.53e-01 85.5% 80.0%
3329059 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.74 50.0 5.49e-01 71.0% 100.0%
4938828 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 59.0 6.06e-01 100.0% 90.0%
1567496 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 58.0 6.01e-01 85.5% 96.5%
5035742 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.36e-01 77.4% 95.0%
3198325 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.72 53.0 3.34e-01 79.0% 26.7%
3588979 4.1.1.137 beta barrels › SH3 › SH3 › SH3 › PcrA_UvrD_tudor 0.72 57.0 5.85e-01 85.5% 93.2%
5042986 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.11e-01 74.2% 93.3%
3199259 4.1.1.286 beta barrels › SH3 › SH3 › SH3 › DUF7072 0.71 55.0 5.47e-01 83.9% 93.8%
5066224 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.70 55.0 4.88e-01 85.5% 64.4%
3922679 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.70 53.0 5.86e-01 85.5% 100.0%
3674165 219.1.1.110 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1, Peptidase_C1_2 0.69 60.0 3.91e-01 98.4% 82.6%
4229837 4.1.1.354 beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.68 61.0 4.34e-01 100.0% 59.5%
4938919 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.67e-01 72.6% 83.1%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.25e-01 88.7% 80.0%
3625963 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 61.0 5.25e-01 100.0% 68.4%
3676844 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 4.67e-01 83.9% 80.0%
3818428 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.65 54.0 5.08e-01 100.0% 76.0%
3878271 101.1.2.284 alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.64 57.0 4.19e-01 96.8% 51.0%
3709057 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 53.0 4.57e-01 96.8% 58.1%
3866038 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.64 56.0 5.02e-01 100.0% 70.6%
3169636 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 56.0 5.02e-01 98.4% 92.9%
3300074 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.84e-01 98.4% 92.6%
4931113 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.62 55.0 4.56e-01 100.0% 60.0%
3303889 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.62 47.0 4.51e-01 85.5% 80.0%
4026958 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 48.0 5.02e-01 98.4% 98.2%
3300051 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.62 51.0 4.84e-01 100.0% 76.0%
3301383 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.62 47.0 5.07e-01 87.1% 100.0%
3598494 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.61 53.0 3.32e-01 100.0% 35.1%
3545467 391.1.2.10 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_1st 0.61 37.0 4.26e-01 74.2% 90.0%
3423337 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.60 45.0 4.30e-01 100.0% 67.5%
4327595 4.1.1.402 beta barrels › SH3 › SH3 › SH3 › DUF2761 0.59 51.0 4.50e-01 100.0% 66.3%
4599267 2003.1.3.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.58 45.0 3.09e-01 83.9% 63.6%
3368254 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.58 43.0 4.48e-01 98.4% 94.5%
3288873 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.58 48.0 2.99e-01 91.9% 38.6%
3259547 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.16e-01 100.0% 55.7%
3834390 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.45e-01 98.4% 100.0%
3800985 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 48.0 3.36e-01 95.2% 87.1%
3635145 2003.1.2.58 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.57 46.0 2.89e-01 91.9% 33.2%
143915 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.57 48.0 2.99e-01 93.5% 41.9%
3910381 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 2.72e-01 95.2% 16.3%
4388251 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.56 47.0 2.95e-01 93.5% 41.7%
4352697 1.1.7.50 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.56 49.0 4.29e-01 100.0% 93.7%
4890852 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 46.0 2.96e-01 93.5% 38.2%
4635782 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.54 47.0 4.02e-01 100.0% 71.2%
3660244 4.1.1.141 beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.53 39.0 3.77e-01 98.4% 68.0%
1878750 11.1.1.171 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_5 0.52 40.0 3.51e-01 100.0% 55.7%
3183666 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.51 39.0 2.35e-01 82.3% 32.9%