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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00043

Bact-Vir

BML_coassembly_scaffold_35_prodigal-single.1__X__X__00043

Identity

Kingdom:
phage

Quality

61.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-84
PDB
D2 high residues 111-185
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 51.0 5.44e-01 100.0% 87.5%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.70 45.0 4.60e-01 100.0% 68.1%
2id0A02 2.40.50.640 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 53.0 5.40e-01 100.0% 84.9%
2wfwA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 45.0 4.88e-01 100.0% 87.9%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 47.0 5.04e-01 100.0% 87.5%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 54.0 4.74e-01 100.0% 62.2%
2ja9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 50.0 4.91e-01 100.0% 78.3%
2z4hA02 2.40.50.540 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain 0.63 50.0 4.87e-01 100.0% 77.9%
1wi5A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 52.0 5.21e-01 100.0% 90.7%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.61 37.0 2.92e-01 100.0% 30.6%
1jjgA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 48.0 4.40e-01 100.0% 64.7%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 4.62e-01 100.0% 80.5%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.60 45.0 4.28e-01 100.0% 67.7%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 46.0 4.70e-01 100.0% 89.2%
1iyjB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 52.0 4.52e-01 100.0% 71.1%
2nttA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 44.0 4.51e-01 100.0% 88.6%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.57 40.0 3.62e-01 100.0% 51.3%
2r61A02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 45.0 4.55e-01 100.0% 90.4%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.56 43.0 4.37e-01 100.0% 87.8%
1auuA00 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.55 34.0 3.76e-01 96.0% 83.6%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 33.0 3.55e-01 100.0% 70.8%
3m4pA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 47.0 4.20e-01 100.0% 73.2%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.54 46.0 4.14e-01 96.0% 72.1%
1wydA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 45.0 4.13e-01 100.0% 70.6%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 47.0 4.23e-01 100.0% 88.6%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 4.12e-01 100.0% 75.8%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 46.0 4.32e-01 100.0% 79.2%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 36.0 3.64e-01 100.0% 72.0%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 43.0 3.10e-01 97.3% 88.0%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 40.0 2.85e-01 94.7% 86.6%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3240790 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 53.0 5.70e-01 100.0% 96.9%
5037218 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 44.0 4.22e-01 100.0% 56.7%
4263787 2.1.1.293 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27162 0.67 50.0 5.33e-01 100.0% 93.8%
4018598 2.1.1.219 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_cyt-4 0.66 54.0 5.28e-01 100.0% 81.2%
4169388 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 46.0 4.52e-01 100.0% 68.8%
3969312 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 46.0 4.75e-01 93.3% 80.0%
5071570 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 48.0 4.78e-01 100.0% 76.2%
2516752 2.1.1.32 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.64 43.0 4.69e-01 100.0% 89.7%
5020098 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 45.0 4.63e-01 77.3% 78.6%
3385864 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.63 44.0 4.85e-01 76.0% 91.7%
4928221 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 50.0 4.27e-01 100.0% 53.2%
1106142 2.20.1.1 beta barrels › OB-fold › NlpE C-terminal domain › NlpE C-terminal domain › NlpE_C 0.63 50.0 4.68e-01 100.0% 69.1%
4088295 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 46.0 4.54e-01 100.0% 73.8%
3436255 2.1.1.29 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep-A_N 0.62 44.0 4.48e-01 96.0% 76.0%
4211951 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.60 48.0 4.72e-01 100.0% 82.5%
3906493 2.1.1.142 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HROB 0.60 48.0 4.06e-01 100.0% 51.5%
4114247 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.60 47.0 4.89e-01 100.0% 94.3%
4045594 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 48.0 4.82e-01 100.0% 88.0%
4934074 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 47.0 4.16e-01 100.0% 60.0%
4970675 2.1.1.224 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.58 46.0 3.99e-01 100.0% 55.0%
405 2.2.1.6 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › SSL_OB 0.58 46.0 4.35e-01 100.0% 72.5%
4033510 2.2.1.6 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › SSL_OB 0.58 47.0 4.36e-01 100.0% 70.5%
5055765 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 4.05e-01 100.0% 58.3%
3436242 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 3.74e-01 100.0% 43.9%
4128954 2.1.1.14 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.57 45.0 4.61e-01 100.0% 92.9%
3969441 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.57 52.0 4.20e-01 100.0% 79.3%
5026271 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.57 50.0 4.38e-01 96.0% 72.7%
5076251 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 46.0 4.09e-01 100.0% 60.9%
4997744 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 4.00e-01 100.0% 58.3%
1674567 2.2.1.6 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › SSL_OB 0.57 45.0 4.28e-01 100.0% 71.3%
5056435 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 48.0 4.55e-01 100.0% 78.9%
4953995 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 45.0 3.95e-01 100.0% 55.8%
3417269 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 50.0 4.25e-01 100.0% 74.4%
1245251 2.1.1.32 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.57 40.0 3.68e-01 100.0% 54.2%
4932452 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 49.0 4.61e-01 100.0% 90.5%
5028042 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 46.0 3.96e-01 100.0% 56.7%
4979493 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 3.94e-01 100.0% 56.7%
4179590 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 45.0 3.89e-01 100.0% 55.8%
4465652 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.74e-01 100.0% 50.8%
4948758 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 45.0 4.67e-01 100.0% 97.1%
5082388 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 3.80e-01 100.0% 51.1%
5069515 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 43.0 3.88e-01 100.0% 58.3%
3319548 2.1.1.46 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › BRCA-2_OB1 0.55 48.0 4.09e-01 100.0% 75.4%
3509807 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 49.0 4.42e-01 100.0% 87.6%
5026964 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 46.0 4.29e-01 100.0% 72.0%
5020392 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 45.0 3.80e-01 100.0% 53.1%
5064247 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 4.08e-01 100.0% 69.7%
5052666 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.54 38.0 3.59e-01 100.0% 59.6%
4210311 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.54 46.0 4.14e-01 96.0% 67.6%
4942076 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 46.0 4.09e-01 100.0% 74.8%
3933890 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.53 41.0 3.71e-01 97.3% 61.0%
3311947 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 43.0 3.60e-01 100.0% 49.3%
5038519 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 44.0 3.91e-01 100.0% 62.6%
5014319 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 4.19e-01 100.0% 92.6%
5083893 2.1.1.287 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS 0.53 43.0 3.80e-01 100.0% 60.0%
3297894 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 47.0 4.02e-01 100.0% 82.5%
4313430 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.53 43.0 3.58e-01 92.0% 70.5%
4145173 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 45.0 4.09e-01 100.0% 70.5%
4965400 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 45.0 3.94e-01 100.0% 70.8%
4250120 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 43.0 3.84e-01 100.0% 61.7%
4182108 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 42.0 3.76e-01 100.0% 60.9%
4416786 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 46.0 4.10e-01 100.0% 89.1%
4961083 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 42.0 3.56e-01 100.0% 52.3%
5056342 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 42.0 3.40e-01 92.0% 83.7%
3571636 206.1.3.35 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF5565 0.52 44.0 3.22e-01 100.0% 41.6%
4449501 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 42.0 3.71e-01 100.0% 58.3%
4945664 2.1.1.357 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA-synt_2 0.52 43.0 4.03e-01 100.0% 73.0%
3991355 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.52 45.0 4.01e-01 100.0% 69.1%
5060970 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 43.0 3.77e-01 100.0% 60.8%
3941210 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.51 38.0 3.50e-01 96.0% 62.1%
3966364 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 44.0 3.95e-01 100.0% 72.7%
3936327 101.1.1.76 alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.50 38.0 3.46e-01 97.3% 61.0%