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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00068

Bact-Vir

BML_coassembly_scaffold_35_prodigal-single.1__X__X__00068

Identity

Kingdom:
phage

Quality

73.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-53
PDB
D2 high residues 67-139
PDB
D3 high residues 142-209
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 44.0 4.87e-01 73.5% 95.8%
3u5eU00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.67 47.0 4.15e-01 75.0% 81.0%
7e5wA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 54.0 4.44e-01 95.6% 71.1%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.63 54.0 4.60e-01 100.0% 64.1%
3evzA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.63 50.0 3.88e-01 98.5% 37.3%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 4.11e-01 97.1% 58.9%
3p04A00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.61 47.0 4.55e-01 100.0% 75.3%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.61 53.0 3.94e-01 100.0% 59.8%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.59 42.0 4.29e-01 75.0% 76.1%
2o5hA00 1.10.3510.10 Mainly Alpha › Orthogonal Bundle › NMB0513-like › NMB0513-like 0.59 51.0 4.22e-01 100.0% 75.8%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 42.0 4.05e-01 77.9% 88.7%
6j09A01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.58 41.0 4.19e-01 76.5% 79.1%
3f2gA00 3.30.450.410 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 41.0 3.00e-01 76.5% 99.0%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.24e-01 97.1% 67.8%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.57 46.0 4.61e-01 100.0% 88.6%
2fulB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 48.0 3.79e-01 100.0% 66.0%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.86e-01 77.9% 75.9%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.56 42.0 4.14e-01 100.0% 77.3%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 48.0 3.13e-01 97.1% 41.1%
3fmcC01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 37.0 2.46e-01 70.6% 32.1%
2esbA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 46.0 3.59e-01 98.5% 62.3%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.96e-01 79.4% 94.2%
3cuqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 4.40e-01 100.0% 90.1%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.29e-01 100.0% 39.7%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.66e-01 77.9% 64.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.73e-01 100.0% 60.2%
4l0fA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 47.0 2.91e-01 100.0% 63.6%
3idwA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.54 38.0 3.92e-01 75.0% 93.9%
5x7fA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 3.31e-01 100.0% 33.3%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 45.0 3.16e-01 100.0% 26.9%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.60e-01 80.9% 61.3%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.53 44.0 3.71e-01 100.0% 83.7%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 45.0 3.56e-01 98.5% 66.2%
2hg2A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 42.0 2.92e-01 95.6% 43.4%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 4.00e-01 100.0% 71.1%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 39.0 3.14e-01 77.9% 78.8%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.52 43.0 4.12e-01 100.0% 81.7%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 4.04e-01 97.1% 93.3%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 4.05e-01 98.5% 73.6%
4qpkB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 38.0 3.20e-01 82.4% 96.3%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 4.01e-01 100.0% 73.6%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.52 41.0 3.72e-01 100.0% 64.2%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 4.07e-01 97.1% 81.3%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 36.0 2.33e-01 75.0% 67.6%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.68e-01 97.1% 67.8%
4b09B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.89e-01 98.5% 69.4%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.86e-01 97.1% 91.4%
7qssA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 43.0 3.24e-01 100.0% 41.5%
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.51 45.0 3.72e-01 100.0% 83.6%
1ka8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.80e-01 97.1% 83.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4081078 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.71 49.0 4.18e-01 75.0% 44.5%
3174361 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.67 49.0 3.42e-01 79.4% 41.6%
4542216 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.67 48.0 5.07e-01 76.5% 88.3%
4660425 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.66 47.0 4.01e-01 77.9% 45.2%
1169399 101.35.1.2 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp 0.65 43.0 4.78e-01 72.1% 90.4%
3249557 195.1.1.3 alpha complex topology › NusB-like › NusB-like › NusB-like › NSUN5_N 0.65 47.0 3.70e-01 76.5% 96.4%
4623624 304.8.1.53 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th 0.61 48.0 3.53e-01 89.7% 32.2%
4028357 873.1.1.4 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP 0.61 53.0 4.37e-01 100.0% 91.5%
4279969 304.8.1.65 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT, PF27446 0.61 48.0 3.60e-01 89.7% 35.2%
4464087 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.60 42.0 4.03e-01 75.0% 75.0%
5057920 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.60 44.0 4.12e-01 79.4% 77.6%
3382070 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.59 46.0 2.84e-01 83.8% 14.4%
3313157 101.1.2.524 alpha arrays › HTH › HTH › winged helix domain › DUF7625 0.58 42.0 4.11e-01 77.9% 84.0%
3898070 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.58 47.0 4.75e-01 97.1% 98.6%
5025624 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.58 42.0 4.02e-01 77.9% 67.5%
4044393 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.58 41.0 4.08e-01 75.0% 75.7%
3839914 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.58 40.0 4.12e-01 75.0% 83.1%
5042056 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 4.27e-01 72.1% 90.9%
4994983 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 4.15e-01 98.5% 75.7%
5041922 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.57 41.0 3.93e-01 98.5% 65.0%
3672161 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.57 44.0 2.94e-01 85.3% 20.3%
5010770 2002.3.1.3 a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Glyco_hydro_57 0.57 47.0 2.91e-01 94.1% 41.8%
5037085 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.83e-01 77.9% 65.6%
3707837 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 3.75e-01 77.9% 61.1%
5072962 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 3.76e-01 77.9% 68.4%
2733 101.1.2.117 alpha arrays › HTH › HTH › winged helix domain › F-112 0.57 46.0 4.61e-01 100.0% 88.6%
5033725 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.57 42.0 3.98e-01 80.9% 75.3%
3815033 207.1.1.47 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_6 0.57 46.0 2.92e-01 95.6% 24.9%
3609798 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.56 47.0 4.10e-01 100.0% 87.0%
3478525 320.1.1.7 a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.56 45.0 4.46e-01 97.1% 86.7%
3964724 3675.1.1.1 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › GyrB_insert 0.56 42.0 3.27e-01 80.9% 43.2%
1299892 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.56 41.0 3.55e-01 79.4% 60.5%
3683636 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.56 48.0 4.66e-01 100.0% 92.2%
3347497 109.4.1.1331 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_long, E_motif 0.56 44.0 3.05e-01 86.8% 27.2%
4944623 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 42.0 3.79e-01 83.8% 91.0%
4963142 101.1.2.908 alpha arrays › HTH › HTH › winged helix domain › DUF5787 0.55 39.0 3.82e-01 97.1% 66.7%
5027864 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.55 39.0 3.81e-01 98.5% 69.3%
4946812 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 36.0 3.78e-01 75.0% 76.7%
3805332 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.54 45.0 3.27e-01 98.5% 39.1%
3739376 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.54 45.0 4.12e-01 100.0% 68.4%
5070603 2006.1.1.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP 0.54 46.0 3.15e-01 100.0% 34.0%
4156356 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.54 43.0 4.04e-01 100.0% 71.1%
5080548 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 4.39e-01 97.1% 88.0%
3970227 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.53 45.0 4.32e-01 97.1% 80.0%
3988732 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.53 44.0 3.83e-01 100.0% 59.3%
1223345 225.1.1.5 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HPTransfase 0.53 38.0 3.21e-01 80.9% 90.0%
3590297 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 43.0 3.89e-01 100.0% 63.0%
3288907 101.1.2.8 alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.53 42.0 4.35e-01 92.6% 95.4%
4994982 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.53 42.0 4.10e-01 97.1% 80.0%
5046905 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 4.11e-01 98.5% 82.2%
3725516 10.12.1.12 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD 0.52 44.0 2.83e-01 100.0% 74.5%
3355197 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 3.95e-01 98.5% 68.0%
3839295 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.52 41.0 4.07e-01 95.6% 84.3%
4927051 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 4.29e-01 100.0% 95.7%
5062744 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 42.0 4.05e-01 97.1% 76.2%
3402809 101.1.2.160 alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.52 43.0 4.12e-01 100.0% 80.0%
5646 837.1.1.1 a+b two layers › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal protein S16 › Ribosomal_S16 0.52 41.0 3.72e-01 100.0% 64.2%
4978330 224.1.1.0 a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like 0.51 41.0 3.57e-01 95.6% 70.8%
3180198 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.51 41.0 3.78e-01 98.5% 68.4%