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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00087

Bact-Vir

BML_coassembly_scaffold_35_prodigal-single.1__X__X__00087

Identity

Kingdom:
phage

Quality

68.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-105
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 46.0 3.92e-01 98.7% 45.4%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.66 44.0 3.51e-01 98.7% 35.3%
1sp8C02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.64 43.0 3.13e-01 98.7% 25.1%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 41.0 4.44e-01 97.4% 79.7%
3wndA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 40.0 3.11e-01 100.0% 29.1%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 47.0 3.48e-01 100.0% 31.3%
1rzuB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.63 42.0 2.85e-01 100.0% 19.7%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 37.0 4.05e-01 92.2% 75.4%
1olrA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.61 39.0 2.87e-01 100.0% 22.4%
4mtsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 45.0 3.76e-01 100.0% 47.3%
6bu2A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 42.0 3.40e-01 98.7% 38.0%
3vl9B00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.59 39.0 2.90e-01 100.0% 24.0%
1cjxB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 43.0 3.23e-01 98.7% 30.2%
1twuA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 41.0 3.49e-01 100.0% 42.3%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 51.0 3.54e-01 98.7% 72.2%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 40.0 3.61e-01 96.1% 53.7%
3zi1A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 31.0 2.67e-01 85.7% 31.8%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 49.0 3.42e-01 97.4% 86.2%
1zc0A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 43.0 2.94e-01 100.0% 22.4%
2qcuB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 48.0 3.44e-01 96.1% 92.6%
1yo8A02 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.55 31.0 3.44e-01 83.1% 71.4%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 34.0 2.95e-01 89.6% 37.7%
7vljA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 34.0 3.23e-01 75.3% 51.6%
1kw3B02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 38.0 3.13e-01 97.4% 38.3%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 45.0 3.09e-01 100.0% 25.8%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 43.0 3.04e-01 89.6% 91.1%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.53 44.0 3.69e-01 100.0% 52.6%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 35.0 3.71e-01 84.4% 76.8%
3nybA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 39.0 3.54e-01 96.1% 56.4%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 41.0 2.72e-01 84.4% 22.1%
2p12A01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.52 42.0 3.34e-01 89.6% 54.7%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.52 46.0 3.97e-01 100.0% 77.5%
4ikcA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 38.0 2.70e-01 98.7% 23.4%
2mjlA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 39.0 2.98e-01 100.0% 33.0%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 36.0 3.41e-01 80.5% 61.5%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 40.0 2.60e-01 85.7% 20.3%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 35.0 3.83e-01 93.5% 91.9%
6iw6A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 38.0 3.46e-01 100.0% 59.3%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.50 34.0 3.16e-01 84.4% 53.4%
6n90A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.50 38.0 3.69e-01 81.8% 93.2%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 43.0 3.97e-01 98.7% 82.4%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4329624 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.69 46.0 4.11e-01 98.7% 49.5%
4057742 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.69 43.0 4.60e-01 93.5% 73.8%
5022812 2004.1.1.175 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA 0.67 44.0 3.24e-01 100.0% 26.0%
4965786 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.67 45.0 4.81e-01 100.0% 83.1%
4216530 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.66 46.0 4.69e-01 98.7% 74.7%
3942335 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.65 44.0 3.81e-01 96.1% 46.1%
3284130 211.1.1.24 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N 0.64 43.0 4.56e-01 96.1% 81.5%
4971611 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.63 46.0 3.48e-01 100.0% 31.9%
1160828 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.63 47.0 4.45e-01 100.0% 67.8%
3834229 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.62 45.0 3.18e-01 100.0% 25.7%
3351970 7512.1.1.24 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_5 0.61 39.0 2.80e-01 100.0% 21.3%
3732822 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.60 54.0 3.30e-01 100.0% 70.0%
3974328 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.60 46.0 4.51e-01 98.7% 75.3%
1075289 2.4.1.5 beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal 0.60 34.0 3.65e-01 70.1% 65.6%
2430320 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.60 42.0 4.29e-01 98.7% 79.2%
4971784 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.59 46.0 4.58e-01 100.0% 80.0%
4562403 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.59 40.0 4.12e-01 100.0% 73.3%
4013580 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 45.0 3.96e-01 85.7% 57.3%
4943638 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.58 43.0 3.15e-01 100.0% 29.0%
4483443 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.58 52.0 3.46e-01 100.0% 76.6%
4964696 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.57 49.0 4.39e-01 100.0% 72.2%
4297683 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 51.0 3.17e-01 100.0% 73.8%
3938027 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.57 41.0 3.43e-01 96.1% 43.7%
4977282 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.57 43.0 3.35e-01 100.0% 37.5%
2595099 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 50.0 3.70e-01 98.7% 87.5%
3960958 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 41.0 3.73e-01 97.4% 55.5%
4005981 2003.1.2.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.56 48.0 3.50e-01 96.1% 94.7%
4030472 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.56 41.0 3.10e-01 96.1% 31.6%
1835868 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 49.0 3.76e-01 98.7% 91.8%
4448182 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 38.0 3.99e-01 96.1% 83.1%
5033664 2003.1.3.10 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FAD_oxidored 0.55 49.0 3.44e-01 100.0% 49.8%
5019052 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.55 39.0 3.53e-01 96.1% 53.7%
5077371 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.55 43.0 3.54e-01 100.0% 45.3%
4946651 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 39.0 3.02e-01 100.0% 32.4%
5027255 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.54 42.0 3.64e-01 100.0% 54.2%
3448058 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 43.0 2.80e-01 85.7% 25.5%
3997529 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.54 48.0 3.24e-01 100.0% 52.2%
3927305 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.13e-01 98.7% 79.1%
4972724 316.1.1.21 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.54 38.0 2.91e-01 97.4% 30.8%
4002671 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 41.0 3.88e-01 83.1% 90.5%
3977677 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.54 36.0 4.03e-01 97.4% 96.4%
5082656 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 45.0 2.91e-01 98.7% 76.0%
4994226 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 48.0 4.04e-01 100.0% 79.2%
5021205 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.52 47.0 3.97e-01 100.0% 80.8%
3742859 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 36.0 3.89e-01 100.0% 93.3%
4082860 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 44.0 3.06e-01 100.0% 50.7%
5004174 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.52 47.0 3.96e-01 100.0% 80.8%
4426764 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.51 47.0 4.22e-01 98.7% 79.6%
4311788 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.51 46.0 4.04e-01 100.0% 76.5%
4325086 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.51 47.0 4.22e-01 98.7% 79.6%
3925078 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.65e-01 85.7% 36.8%
3604159 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 3.86e-01 94.8% 69.4%
4311607 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.51 45.0 3.72e-01 100.0% 57.1%
4436471 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.51 46.0 4.14e-01 100.0% 79.0%
4187163 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.50 46.0 3.98e-01 100.0% 76.5%
5049530 319.1.1.23 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.50 36.0 3.49e-01 98.7% 65.6%
4444537 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.50 46.0 4.06e-01 100.0% 71.6%
4002116 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 41.0 3.46e-01 94.8% 75.2%