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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00099
Bact-VirBML_coassembly_scaffold_35_prodigal-single.1__X__X__00099
Identity
- Kingdom:
- phage
Quality
85.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-69
Domain cluster:
rep: BML_coassembly_scaffold_35_prodigal-single.1__X__X__00185__D3-67
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p0wA03 | 1.10.10.390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.75 | 53.0 | 5.89e-01 | 100.0% | 94.4% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 50.0 | 3.35e-01 | 81.2% | 85.2% |
| 2dk1A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.59 | 34.0 | 3.89e-01 | 91.3% | 78.0% |
| 4lurA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.58 | 39.0 | 2.79e-01 | 97.1% | 20.4% |
| 1j7xA02 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.54 | 37.0 | 2.72e-01 | 98.6% | 23.4% |
| 3vkhA08 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 47.0 | 3.03e-01 | 100.0% | 20.8% |
| 3vkgA07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 47.0 | 2.95e-01 | 100.0% | 18.9% |
| 3vkhB09 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 46.0 | 3.46e-01 | 100.0% | 39.9% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.53 | 42.0 | 3.25e-01 | 100.0% | 35.0% |
| 1pg2A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 42.0 | 2.73e-01 | 89.9% | 19.4% |
| 1xa3A01 | 3.40.50.10540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 | 0.52 | 39.0 | 2.59e-01 | 81.2% | 93.9% |
| 3u6uC00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.52 | 41.0 | 2.77e-01 | 85.5% | 36.8% |
| 2g5dA02 | 2.40.240.50 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases | 0.52 | 36.0 | 3.02e-01 | 73.9% | 82.7% |
| 4ns4A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.76e-01 | 88.4% | 65.7% |
| 2g6gA02 | 2.40.240.50 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases | 0.51 | 42.0 | 3.18e-01 | 98.6% | 95.4% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4361419 | 101.1.2.267 ↗ | alpha arrays › HTH › HTH › winged helix domain › Nse4_C | 0.67 | 49.0 | 4.19e-01 | 100.0% | 47.8% |
| 5025215 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.65 | 48.0 | 3.00e-01 | 79.7% | 57.2% |
| 4931925 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 55.0 | 4.90e-01 | 100.0% | 66.7% |
| 4443892 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.64 | 42.0 | 4.65e-01 | 87.0% | 85.5% |
| 4982570 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.63 | 47.0 | 4.69e-01 | 100.0% | 80.0% |
| 4941259 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.62 | 45.0 | 3.70e-01 | 100.0% | 40.0% |
| 5064574 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.61 | 44.0 | 4.64e-01 | 94.2% | 86.7% |
| 4076804 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.60 | 38.0 | 4.17e-01 | 88.4% | 81.8% |
| 3999926 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 38.0 | 4.06e-01 | 84.1% | 81.8% |
| 3945044 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.58 | 40.0 | 3.32e-01 | 75.4% | 56.1% |
| 3937069 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 39.0 | 2.36e-01 | 91.3% | 9.9% |
| 4117250 | 3604.1.1.1 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion | 0.58 | 39.0 | 4.18e-01 | 92.8% | 89.1% |
| 4030033 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.57 | 41.0 | 4.04e-01 | 75.4% | 93.3% |
| 5025218 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 49.0 | 3.05e-01 | 100.0% | 25.8% |
| 4989783 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.56 | 44.0 | 2.70e-01 | 87.0% | 53.0% |
| 3216556 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 39.0 | 3.06e-01 | 100.0% | 33.3% |
| 3587270 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 47.0 | 3.98e-01 | 95.7% | 95.7% |
| 4345169 | 101.1.1.33 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 44.0 | 3.55e-01 | 100.0% | 44.1% |
| 3600193 | 327.19.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain | 0.54 | 39.0 | 3.75e-01 | 75.4% | 66.7% |
| 3512361 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.54 | 40.0 | 3.76e-01 | 98.6% | 63.5% |
| 3400005 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.54 | 38.0 | 3.98e-01 | 89.9% | 86.7% |
| 3819067 | 386.1.1.207 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED_2 | 0.53 | 37.0 | 3.84e-01 | 73.9% | 100.0% |
| 3308663 | 601.3.1.11 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PHD_Oberon | 0.53 | 43.0 | 3.46e-01 | 91.3% | 46.9% |
| 3681410 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 38.0 | 3.47e-01 | 100.0% | 56.8% |
| 4936600 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.53 | 38.0 | 3.22e-01 | 78.3% | 90.0% |
| 3827097 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.52 | 35.0 | 3.06e-01 | 100.0% | 43.6% |
| 4043859 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.52 | 38.0 | 3.39e-01 | 78.3% | 94.0% |
| 4137634 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 36.0 | 3.31e-01 | 76.8% | 53.7% |
| 3426675 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.51 | 33.0 | 3.49e-01 | 72.5% | 76.3% |
| 3922996 | 198.1.1.4 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 | 0.51 | 42.0 | 3.62e-01 | 100.0% | 72.8% |
| 3939280 | 109.4.1.909 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DOP1_C | 0.50 | 41.0 | 2.83e-01 | 95.7% | 36.1% |
| 4064719 | 242.1.1.5 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N | 0.50 | 44.0 | 3.87e-01 | 100.0% | 85.7% |