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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00146
Bact-VirBML_coassembly_scaffold_35_prodigal-single.1__X__X__00146
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-254
Domain cluster:
rep: KC862298.1__AGR89222.1__PAK_P200101__00102__D3-152
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17338.9 best | GP88 | 64.5 | 1.80e-17 | 71.8% | 57.1% |
D2
high
residues 270-373
Domain cluster:
rep: LacPavin_0818_WC55_scaffold_113784_prodigal-single.1__X__X__00385__D355-449
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qw4B02 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 51.0 | 4.22e-01 | 90.4% | 72.4% |
| 8hbfB01 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.58 | 40.0 | 3.32e-01 | 71.2% | 82.9% |
| 1xfjA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.54 | 47.0 | 3.60e-01 | 100.0% | 93.4% |
| 1qhoA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 45.0 | 3.10e-01 | 97.1% | 87.3% |
| 2jigA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.52 | 45.0 | 3.61e-01 | 95.2% | 96.1% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3878703 | 2004.1.1.186 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 | 0.56 | 50.0 | 3.87e-01 | 100.0% | 80.0% |
| 3900006 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.56 | 49.0 | 3.67e-01 | 98.1% | 89.9% |
| 3397089 | 2004.1.1.920 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, AAA_11, AAA_12 | 0.56 | 49.0 | 3.08e-01 | 100.0% | 26.9% |
| 3256533 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.53 | 42.0 | 2.58e-01 | 89.4% | 57.2% |
| 3164272 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.52 | 45.0 | 4.10e-01 | 100.0% | 81.3% |
| 4023026 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.51 | 45.0 | 3.38e-01 | 100.0% | 95.0% |
| 4586546 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.51 | 39.0 | 4.21e-01 | 80.8% | 96.7% |
| 4965542 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.51 | 39.0 | 4.20e-01 | 80.8% | 96.7% |
| 5036060 | 259.1.1.2 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain › Ribosomal_L31e | 0.51 | 38.0 | 4.29e-01 | 76.9% | 100.0% |
| 5068234 | 259.1.1.0 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain | 0.51 | 39.0 | 4.23e-01 | 80.8% | 100.0% |
| 4929567 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.50 | 43.0 | 3.98e-01 | 100.0% | 82.1% |
| 4441223 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.50 | 43.0 | 3.90e-01 | 100.0% | 80.0% |