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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00201
Bact-VirBML_coassembly_scaffold_35_prodigal-single.1__X__X__00201
Identity
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 300-388
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gz1A00 | 3.20.20.40 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 1, 4-beta cellobiohydrolase | 0.69 | 52.0 | 3.44e-01 | 79.8% | 48.3% |
| 4f1jA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.67 | 53.0 | 4.06e-01 | 84.3% | 78.5% |
| 6oibA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 48.0 | 4.06e-01 | 77.5% | 60.9% |
| 1bxkA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 49.0 | 3.59e-01 | 80.9% | 88.5% |
| 5u4qB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 48.0 | 3.29e-01 | 77.5% | 55.9% |
| 1k77A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.64 | 50.0 | 3.59e-01 | 84.3% | 63.3% |
| 3m2pB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 47.0 | 3.37e-01 | 78.7% | 76.5% |
| 4ltyA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.61 | 47.0 | 3.31e-01 | 82.0% | 33.1% |
| 3fcsB03 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.61 | 55.0 | 4.00e-01 | 100.0% | 88.5% |
| 3ay3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 45.0 | 3.42e-01 | 80.9% | 83.3% |
| 7zveA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 43.0 | 3.42e-01 | 76.4% | 47.9% |
| 1dpgA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.60 | 42.0 | 3.43e-01 | 74.2% | 97.1% |
| 3g8rA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 46.0 | 3.38e-01 | 84.3% | 41.4% |
| 5enzA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 44.0 | 3.66e-01 | 78.7% | 46.0% |
| 3thoB01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.59 | 45.0 | 3.29e-01 | 82.0% | 80.6% |
| 6p8vA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 52.0 | 4.01e-01 | 100.0% | 54.5% |
| 3oy2A02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.59 | 43.0 | 3.27e-01 | 79.8% | 34.9% |
| 1wteA02 | 3.40.1560.10 | Alpha Beta › 3-Layer(aba) Sandwich › type ii restriction endonuclease, domain 2 › type ii restriction endonuclease, domain 2 | 0.58 | 43.0 | 3.90e-01 | 78.7% | 71.8% |
| 7l9pE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 52.0 | 3.95e-01 | 100.0% | 56.6% |
| 3hgmA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.58 | 42.0 | 3.56e-01 | 75.3% | 63.9% |
| 2yjgA02 | 3.40.50.11440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › LarA, N-terminal domain | 0.58 | 43.0 | 3.17e-01 | 77.5% | 31.3% |
| 1fs5A00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 46.0 | 3.33e-01 | 87.6% | 33.8% |
| 5fl7G02 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.58 | 40.0 | 3.12e-01 | 79.8% | 32.2% |
| 3a1fA00 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.57 | 43.0 | 3.58e-01 | 80.9% | 54.0% |
| 1hg3A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 45.0 | 3.36e-01 | 84.3% | 37.9% |
| 3lwaA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 43.0 | 3.61e-01 | 80.9% | 46.8% |
| 3ewlB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 42.0 | 3.63e-01 | 78.7% | 53.3% |
| 3h8lA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 42.0 | 3.59e-01 | 80.9% | 61.6% |
| 3jyhA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 49.0 | 3.42e-01 | 98.9% | 60.4% |
| 1on4A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 41.0 | 3.39e-01 | 79.8% | 45.4% |
| 2p14A00 | 3.40.91.50 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.56 | 49.0 | 3.92e-01 | 100.0% | 59.1% |
| 3hpxA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 49.0 | 3.45e-01 | 100.0% | 65.8% |
| 2bpoA04 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.55 | 43.0 | 3.64e-01 | 87.6% | 48.1% |
| 4dqlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.55 | 42.0 | 3.52e-01 | 86.5% | 46.0% |
| 3hwwA01 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.54 | 50.0 | 3.77e-01 | 100.0% | 53.4% |
| 4jgiB02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.54 | 40.0 | 3.61e-01 | 78.7% | 89.7% |
| 3u7vA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 47.0 | 3.17e-01 | 100.0% | 61.1% |
| 4c6rA00 | 3.40.50.10140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain | 0.53 | 45.0 | 3.77e-01 | 96.6% | 77.8% |
| 1kngA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 38.0 | 3.30e-01 | 82.0% | 46.5% |
| 1ea0A04 | 2.160.20.60 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Glutamate synthase, alpha subunit, C-terminal domain | 0.53 | 45.0 | 3.32e-01 | 98.9% | 49.8% |
| 3b5iB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 40.0 | 3.01e-01 | 83.1% | 91.0% |
| 2ljaA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 39.0 | 3.29e-01 | 78.7% | 46.1% |
| 1u1jA01 | 3.20.20.210 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.52 | 46.0 | 3.03e-01 | 100.0% | 50.4% |
| 3wrwA01 | 3.40.50.12020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NN domain | 0.51 | 44.0 | 3.54e-01 | 98.9% | 77.3% |
| 7xjrA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 43.0 | 3.13e-01 | 100.0% | 48.3% |
| 7u7hA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.50 | 44.0 | 3.34e-01 | 100.0% | 52.0% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3261847 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.68 | 61.0 | 4.22e-01 | 100.0% | 47.4% |
| 4936873 | 7531.1.1.1 ↗ | a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase | 0.66 | 49.0 | 3.35e-01 | 78.7% | 65.8% |
| 3187463 | 7575.1.1.0 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like | 0.66 | 50.0 | 3.70e-01 | 80.9% | 63.8% |
| 3899989 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.66 | 48.0 | 4.02e-01 | 77.5% | 50.6% |
| 4934312 | 7601.1.1.0 ↗ | a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain | 0.66 | 48.0 | 3.64e-01 | 77.5% | 34.4% |
| 3679783 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.65 | 46.0 | 3.21e-01 | 79.8% | 23.2% |
| 5048470 | 2006.1.6.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_3 | 0.64 | 59.0 | 4.35e-01 | 100.0% | 85.6% |
| 4033383 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.64 | 47.0 | 4.03e-01 | 79.8% | 62.0% |
| 3636608 | 2003.1.2.191 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_Gly3P_dh_N | 0.63 | 46.0 | 4.28e-01 | 76.4% | 88.1% |
| 3729979 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.62 | 55.0 | 4.30e-01 | 100.0% | 59.5% |
| 4277736 | 2004.1.1.420 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, TIP49 | 0.61 | 55.0 | 4.22e-01 | 100.0% | 60.5% |
| 4574284 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 45.0 | 3.35e-01 | 79.8% | 70.2% |
| 3601627 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 54.0 | 4.08e-01 | 100.0% | 47.7% |
| 3757217 | 2006.1.4.30 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_TASOR | 0.59 | 45.0 | 3.82e-01 | 80.9% | 58.7% |
| 5005878 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.59 | 42.0 | 3.61e-01 | 75.3% | 54.7% |
| 4560183 | 7512.1.1.32 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_1_4 | 0.59 | 45.0 | 3.55e-01 | 82.0% | 37.4% |
| 5016537 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 53.0 | 3.44e-01 | 100.0% | 68.8% |
| 3829504 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.59 | 46.0 | 3.78e-01 | 83.1% | 58.1% |
| 3676335 | 2006.1.1.54 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, PhoLip_ATPase_C | 0.59 | 51.0 | 3.93e-01 | 100.0% | 41.4% |
| 3437108 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.59 | 51.0 | 3.70e-01 | 100.0% | 33.5% |
| 4977260 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 42.0 | 3.51e-01 | 76.4% | 46.6% |
| 3268413 | 2004.1.1.66 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase_2 | 0.59 | 51.0 | 3.84e-01 | 100.0% | 68.5% |
| 5076870 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.59 | 43.0 | 3.51e-01 | 83.1% | 39.4% |
| 4001466 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.58 | 53.0 | 3.79e-01 | 100.0% | 47.8% |
| 3753230 | 2004.1.1.139 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Torsin | 0.58 | 52.0 | 3.66e-01 | 100.0% | 73.9% |
| 4560916 | 2002.1.1.68 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_56 | 0.58 | 52.0 | 3.39e-01 | 100.0% | 66.0% |
| 3329750 | 2006.1.1.50 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3, PhoLip_ATPase_C | 0.58 | 51.0 | 3.78e-01 | 100.0% | 38.3% |
| 4043000 | 2002.1.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM | 0.57 | 43.0 | 3.28e-01 | 83.1% | 35.3% |
| 3249180 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.57 | 41.0 | 2.85e-01 | 77.5% | 22.3% |
| 5027581 | 2008.1.1.141 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_19 | 0.57 | 40.0 | 3.72e-01 | 78.7% | 58.2% |
| 4934054 | 2003.4.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP | 0.57 | 41.0 | 3.15e-01 | 75.3% | 48.5% |
| 4027191 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.57 | 50.0 | 3.69e-01 | 100.0% | 41.6% |
| 4265987 | 2495.1.1.2 ↗ | a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N_1 | 0.57 | 41.0 | 4.23e-01 | 77.5% | 84.7% |
| 5056808 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.57 | 41.0 | 3.07e-01 | 77.5% | 34.2% |
| 3259105 | 2003.1.5.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_7 | 0.56 | 41.0 | 3.49e-01 | 77.5% | 49.7% |
| 3620417 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.56 | 41.0 | 3.22e-01 | 79.8% | 51.0% |
| 3495573 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.56 | 40.0 | 4.02e-01 | 76.4% | 86.7% |
| 3356823 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.55 | 43.0 | 3.26e-01 | 84.3% | 36.1% |
| 3647789 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.55 | 38.0 | 2.66e-01 | 70.8% | 27.2% |
| 4323951 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.54 | 38.0 | 2.81e-01 | 80.9% | 25.9% |
| 3781390 | 2006.1.4.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XPG_N,XPG_I | 0.53 | 38.0 | 2.95e-01 | 76.4% | 50.2% |
| None | — | 0.53 | 46.0 | 3.88e-01 | 100.0% | 56.1% | |
| 3855879 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.52 | 45.0 | 3.72e-01 | 98.9% | 95.3% |
| 4312768 | 2002.1.1.3 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TIM | 0.52 | 45.0 | 3.26e-01 | 100.0% | 33.1% |
| 4165373 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 44.0 | 3.13e-01 | 95.5% | 88.8% |
| 4344729 | 2005.1.1.38 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTU2 | 0.51 | 43.0 | 2.93e-01 | 97.8% | 88.2% |
| 3731893 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 40.0 | 2.87e-01 | 86.5% | 75.1% |
D2
medium
residues 453-514
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jlvC00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.75 | 54.0 | 4.61e-01 | 100.0% | 48.5% |
| 5gkdA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 61.0 | 3.99e-01 | 100.0% | 24.9% |
| 4oj5C04 | 2.160.20.130 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.69 | 57.0 | 4.07e-01 | 100.0% | 30.8% |
| 3zppA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.66 | 57.0 | 3.50e-01 | 100.0% | 21.6% |
| 1rwrA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.60 | 52.0 | 3.37e-01 | 100.0% | 39.1% |
| 4j4hA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 35.0 | 3.00e-01 | 100.0% | 38.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3546698 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.73 | 55.0 | 4.11e-01 | 100.0% | 31.9% |
| 3256107 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.72 | 60.0 | 3.81e-01 | 100.0% | 18.2% |
| 3650986 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.70 | 52.0 | 3.36e-01 | 100.0% | 16.5% |
| 3699914 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.68 | 54.0 | 4.55e-01 | 100.0% | 51.4% |
| 3627892 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.68 | 49.0 | 3.42e-01 | 100.0% | 23.4% |
| 4935713 | 207.14.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin | 0.67 | 44.0 | 3.61e-01 | 100.0% | 36.5% |
| 3629898 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.66 | 49.0 | 4.73e-01 | 100.0% | 69.9% |
| 3201342 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.66 | 50.0 | 3.93e-01 | 98.4% | 37.1% |
| 5058080 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.65 | 57.0 | 3.48e-01 | 100.0% | 50.1% |
| 3997590 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.65 | 43.0 | 4.37e-01 | 98.4% | 70.0% |
| 5072865 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.62 | 53.0 | 3.62e-01 | 100.0% | 32.7% |
| 4969389 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.62 | 52.0 | 3.27e-01 | 100.0% | 24.5% |
| 4331893 | 207.6.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › RTX | 0.62 | 53.0 | 4.11e-01 | 100.0% | 62.8% |
| 3585250 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.61 | 47.0 | 3.16e-01 | 100.0% | 19.6% |
| 3719723 | 207.2.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.61 | 52.0 | 3.46e-01 | 100.0% | 22.9% |
| 3684090 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 40.0 | 3.85e-01 | 100.0% | 58.7% |
| 7226 | 207.2.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › TPS | 0.60 | 52.0 | 3.37e-01 | 100.0% | 39.1% |
| 3307012 | 207.2.2.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin › Glyco_hydro_28 | 0.59 | 50.0 | 3.82e-01 | 100.0% | 50.6% |
| 3513692 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.55 | 47.0 | 3.02e-01 | 100.0% | 19.7% |
| 3421120 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.55 | 43.0 | 3.13e-01 | 91.9% | 44.4% |
| 5038902 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 4.07e-01 | 100.0% | 68.4% |
| 3521156 | 375.4.1.10 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › Amnionless | 0.53 | 41.0 | 3.19e-01 | 100.0% | 36.7% |
| 1954234 | 207.2.1.31 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Gp49_Pectate_lyase_like | 0.53 | 41.0 | 3.70e-01 | 96.8% | 59.4% |
| 1714448 | 207.2.1.31 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Gp49_Pectate_lyase_like | 0.52 | 43.0 | 3.78e-01 | 100.0% | 79.0% |
| 3722181 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.52 | 44.0 | 3.76e-01 | 100.0% | 57.1% |
D3
medium
residues 624-650_664-792
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w7zA00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.74 | 70.0 | 6.27e-01 | 100.0% | 82.1% |
| 2bm5B00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.74 | 68.0 | 6.50e-01 | 98.7% | 92.8% |
| 2f3lA00 | 2.160.20.80 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA | 0.73 | 60.0 | 6.44e-01 | 87.8% | 100.0% |
| 2uvfB02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.73 | 67.0 | 4.76e-01 | 99.4% | 82.0% |
| 7dmkA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 66.0 | 5.30e-01 | 99.4% | 70.6% |
| 3gq8A01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.72 | 65.0 | 4.65e-01 | 100.0% | 58.4% |
| 5z9tA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 66.0 | 4.58e-01 | 100.0% | 55.0% |
| 4c2lA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.71 | 66.0 | 4.95e-01 | 100.0% | 77.7% |
| 4oj6C03 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 65.0 | 4.79e-01 | 100.0% | 70.5% |
| 1bheA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.70 | 64.0 | 4.79e-01 | 100.0% | 67.6% |
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.69 | 57.0 | 5.74e-01 | 95.5% | 87.3% |
| 1vblA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.69 | 64.0 | 4.62e-01 | 100.0% | 82.9% |
| 4mxnB00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.69 | 63.0 | 5.52e-01 | 98.7% | 91.2% |
| 1ogoX02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.69 | 64.0 | 4.78e-01 | 100.0% | 70.3% |
| 1k8fA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.66 | 55.0 | 5.50e-01 | 93.6% | 88.5% |
| 2yuhA01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.66 | 58.0 | 5.65e-01 | 94.9% | 91.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3275165 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.78 | 61.0 | 5.79e-01 | 81.4% | 95.6% |
| None | — | 0.78 | 49.0 | 6.05e-01 | 82.7% | 99.0% | |
| 134728 | 207.9.1.6 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_4 | 0.74 | 70.0 | 6.27e-01 | 100.0% | 82.1% |
| 2512645 | 207.2.1.24 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Chondroitinas_B | 0.74 | 68.0 | 4.71e-01 | 100.0% | 64.3% |
| 5027061 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.73 | 69.0 | 4.61e-01 | 100.0% | 37.8% |
| 4972671 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.73 | 67.0 | 5.10e-01 | 97.4% | 65.3% |
| 5070696 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.73 | 68.0 | 5.17e-01 | 100.0% | 67.5% |
| 3713775 | 207.2.1.22 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix | 0.72 | 68.0 | 5.01e-01 | 100.0% | 82.1% |
| 5060473 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.72 | 66.0 | 4.80e-01 | 100.0% | 51.0% |
| 4968922 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.71 | 65.0 | 4.76e-01 | 100.0% | 46.0% |
| 5027419 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.70 | 65.0 | 4.30e-01 | 100.0% | 37.7% |
| 3335697 | 207.2.1.3 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 | 0.70 | 65.0 | 5.07e-01 | 99.4% | 66.9% |
| 1222072 | 207.2.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 | 0.70 | 64.0 | 4.57e-01 | 99.4% | 70.1% |
| 4942768 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.70 | 63.0 | 5.93e-01 | 98.1% | 96.3% |
| 4021507 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.70 | 64.0 | 5.68e-01 | 100.0% | 91.1% |
| 4011657 | 207.2.1.9 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase | 0.70 | 64.0 | 5.61e-01 | 100.0% | 88.7% |
| 3305986 | 208.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein | 0.70 | 50.0 | 5.75e-01 | 92.9% | 100.0% |
| 3517885 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.68 | 55.0 | 5.27e-01 | 89.1% | 73.9% |
| 3941286 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.68 | 62.0 | 5.32e-01 | 100.0% | 90.6% |
| 5017937 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.67 | 62.0 | 5.68e-01 | 100.0% | 91.5% |
| 5023405 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.66 | 61.0 | 5.39e-01 | 99.4% | 75.9% |
| 3268560 | 207.2.1.72 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › PF29671 | 0.66 | 60.0 | 5.12e-01 | 100.0% | 77.6% |
| 3254891 | 207.6.1.8 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › Nucleoporin_FG | 0.66 | 51.0 | 5.42e-01 | 92.9% | 94.1% |
| 3250810 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.66 | 60.0 | 5.07e-01 | 100.0% | 77.1% |
| 3459646 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.64 | 53.0 | 5.15e-01 | 100.0% | 80.5% |
| 3814260 | 207.1.1.60 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_8 | 0.64 | 58.0 | 3.56e-01 | 100.0% | 26.5% |
| 158287 | 207.4.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C | 0.62 | 55.0 | 5.48e-01 | 99.4% | 90.9% |
| 4952811 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 46.0 | 3.86e-01 | 87.2% | 67.3% |