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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00216
Bact-VirBML_coassembly_scaffold_35_prodigal-single.1__X__X__00216
Identity
- Kingdom:
- phage
Quality
95.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-77
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c2uA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.72 | 35.0 | 3.38e-01 | 100.0% | 39.5% |
| 1aj5A00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.70 | 64.0 | 4.73e-01 | 100.0% | 61.3% |
| 7eebI01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.69 | 62.0 | 4.67e-01 | 100.0% | 45.0% |
| 2i7aA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.67 | 59.0 | 4.58e-01 | 100.0% | 65.0% |
| 1sseB00 | 1.10.238.100 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B | 0.67 | 52.0 | 4.85e-01 | 90.0% | 68.6% |
| 1z4hA01 | 1.10.238.160 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.64 | 48.0 | 5.25e-01 | 80.0% | 96.6% |
| 3qaoA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.64 | 48.0 | 3.88e-01 | 81.4% | 43.6% |
| 3ez2A01 | 1.10.1660.30 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.63 | 48.0 | 4.82e-01 | 81.4% | 88.6% |
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.62 | 45.0 | 3.75e-01 | 78.6% | 45.4% |
| 2jmlA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.62 | 47.0 | 4.52e-01 | 82.9% | 80.2% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.61 | 46.0 | 4.57e-01 | 81.4% | 90.3% |
| 6oh6A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.61 | 43.0 | 2.83e-01 | 75.7% | 20.6% |
| 2xq0A03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.57 | 42.0 | 3.35e-01 | 81.4% | 79.6% |
| 1ft8E00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 31.0 | 3.63e-01 | 95.7% | 81.8% |
| 1aroP03 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 41.0 | 3.18e-01 | 77.1% | 48.0% |
| 2kvvA00 | 1.10.1660.60 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 | 0.55 | 45.0 | 4.39e-01 | 91.4% | 87.2% |
| 4erdA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 34.0 | 3.03e-01 | 97.1% | 39.8% |
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.71e-01 | 81.4% | 65.3% |
| 1fnoA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 46.0 | 3.13e-01 | 100.0% | 96.6% |
| 3h4sE00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 46.0 | 4.19e-01 | 100.0% | 72.9% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 43.0 | 3.34e-01 | 92.9% | 57.5% |
| 1rp0A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 39.0 | 2.82e-01 | 100.0% | 24.6% |
| 3c4nA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 45.0 | 3.15e-01 | 100.0% | 43.2% |
| 1gwcA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 36.0 | 3.48e-01 | 75.7% | 85.0% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 38.0 | 3.23e-01 | 87.1% | 47.6% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3406526 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.75 | 67.0 | 6.02e-01 | 100.0% | 77.9% |
| 4021446 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.71 | 62.0 | 5.49e-01 | 100.0% | 67.6% |
| 3170713 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.70 | 63.0 | 4.01e-01 | 100.0% | 24.9% |
| 3188112 | 108.1.1.25 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 | 0.69 | 61.0 | 4.93e-01 | 100.0% | 53.3% |
| None | — | 0.68 | 61.0 | 4.55e-01 | 100.0% | 42.3% | |
| 4657531 | 108.1.1.52 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › End3 | 0.68 | 59.0 | 4.88e-01 | 100.0% | 57.7% |
| 3559386 | 108.1.1.152 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30398 | 0.67 | 58.0 | 5.26e-01 | 100.0% | 73.0% |
| 3719636 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.67 | 57.0 | 3.85e-01 | 100.0% | 36.7% |
| 4412832 | 108.1.1.50 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › Rad33 | 0.66 | 58.0 | 4.47e-01 | 100.0% | 89.7% |
| 3999923 | 108.1.1.32 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_10 | 0.66 | 57.0 | 4.13e-01 | 100.0% | 32.6% |
| 3928497 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.64 | 55.0 | 5.07e-01 | 100.0% | 76.8% |
| 3589820 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.64 | 46.0 | 3.82e-01 | 77.1% | 46.4% |
| 3282255 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.63 | 48.0 | 4.19e-01 | 82.9% | 62.0% |
| 4470278 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.63 | 45.0 | 3.88e-01 | 77.1% | 50.4% |
| 4668740 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.63 | 47.0 | 4.16e-01 | 81.4% | 55.2% |
| 5027627 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.62 | 45.0 | 4.97e-01 | 78.6% | 100.0% |
| 1834379 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.62 | 50.0 | 5.20e-01 | 88.6% | 95.5% |
| 3937985 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.61 | 44.0 | 4.80e-01 | 82.9% | 98.2% |
| 3387406 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.60 | 45.0 | 4.01e-01 | 81.4% | 62.9% |
| 3643606 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.60 | 51.0 | 4.28e-01 | 100.0% | 83.8% |
| 3588272 | 101.1.9.17 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 | 0.60 | 47.0 | 4.51e-01 | 91.4% | 72.9% |
| 3282573 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.59 | 47.0 | 3.92e-01 | 91.4% | 49.6% |
| 4033365 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.58 | 48.0 | 3.38e-01 | 97.1% | 47.1% |
| 3881579 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 50.0 | 3.67e-01 | 100.0% | 39.5% |
| 3651470 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 48.0 | 4.03e-01 | 98.6% | 56.9% |
| 3621304 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 46.0 | 4.35e-01 | 91.4% | 85.9% |
| 3999617 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.56 | 47.0 | 2.84e-01 | 100.0% | 17.7% |
| 3576694 | 371.1.1.1 ↗ | few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_1 | 0.56 | 42.0 | 3.38e-01 | 82.9% | 84.7% |
| 3342447 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 41.0 | 2.36e-01 | 91.4% | 6.9% |
| 3723194 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 45.0 | 4.41e-01 | 98.6% | 86.3% |
| 3227300 | 5050.1.1.11 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › UNC-93 | 0.54 | 42.0 | 3.04e-01 | 88.6% | 72.3% |
| 3289373 | 3601.1.1.0 ↗ | alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain | 0.54 | 40.0 | 3.22e-01 | 81.4% | 40.0% |
| 4946343 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.53 | 41.0 | 3.30e-01 | 85.7% | 90.0% |
| 4149681 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.53 | 42.0 | 3.62e-01 | 91.4% | 52.5% |
| 3275675 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 45.0 | 2.71e-01 | 100.0% | 28.1% |
| 3167073 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 43.0 | 3.43e-01 | 97.1% | 88.7% |
| 3353864 | 101.1.2.212 ↗ | alpha arrays › HTH › HTH › winged helix domain › Cac1_C | 0.52 | 38.0 | 3.84e-01 | 81.4% | 81.4% |
| 4016874 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.52 | 44.0 | 2.95e-01 | 100.0% | 29.7% |
| 3740887 | 102.1.2.10 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › Q_salvage | 0.52 | 36.0 | 2.41e-01 | 75.7% | 35.0% |
| 4935585 | 101.1.9.75 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF61 | 0.51 | 37.0 | 3.79e-01 | 91.4% | 80.0% |
| 3815453 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.51 | 39.0 | 3.64e-01 | 87.1% | 65.6% |
| 3515177 | 4308.1.1.0 ↗ | a+b complex topology › YbiA-like › YbiA-like › YbiA-like | 0.51 | 39.0 | 2.92e-01 | 82.9% | 34.2% |
| 3966553 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.51 | 44.0 | 3.13e-01 | 100.0% | 40.9% |
| 3507860 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 38.0 | 3.39e-01 | 81.4% | 90.5% |
| 3729467 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.51 | 43.0 | 3.05e-01 | 100.0% | 63.7% |
| None | — | 0.51 | 44.0 | 3.10e-01 | 100.0% | 41.7% | |
| 4953425 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.51 | 37.0 | 2.93e-01 | 81.4% | 79.4% |
| 4973619 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.50 | 38.0 | 2.97e-01 | 84.3% | 43.5% |
| 3745751 | 2003.1.2.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO,FAO_M | 0.50 | 43.0 | 3.02e-01 | 100.0% | 37.4% |
| 3812553 | 101.1.2.396 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 | 0.50 | 38.0 | 3.14e-01 | 85.7% | 42.1% |
| 4088754 | 2003.1.2.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Thi4 | 0.50 | 41.0 | 2.91e-01 | 98.6% | 80.7% |