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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00230

Bact-Vir

BML_coassembly_scaffold_35_prodigal-single.1__X__X__00230

Identity

Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sz2B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 51.0 4.32e-01 100.0% 49.2%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.67 49.0 4.03e-01 79.5% 62.8%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.65 47.0 3.88e-01 78.1% 73.5%
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 57.0 3.97e-01 100.0% 90.2%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 55.0 3.99e-01 100.0% 33.5%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 3.61e-01 75.3% 52.7%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 52.0 4.28e-01 94.5% 90.8%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.37e-01 75.3% 55.3%
3grdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 43.0 3.60e-01 80.8% 53.8%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.57 50.0 3.57e-01 100.0% 78.4%
3k0zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.40e-01 80.8% 45.0%
3bexA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 50.0 4.40e-01 100.0% 84.8%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.41e-01 78.1% 51.9%
6oziB00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.56 49.0 3.46e-01 100.0% 80.9%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.43e-01 79.5% 53.5%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 3.74e-01 89.0% 74.2%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 43.0 3.38e-01 86.3% 78.9%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 3.64e-01 78.1% 77.2%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.55 40.0 3.28e-01 79.5% 72.1%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 40.0 3.88e-01 80.8% 89.5%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.54 42.0 3.55e-01 84.9% 74.4%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 43.0 2.67e-01 86.3% 69.2%
3rqwA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 46.0 3.51e-01 100.0% 70.0%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 39.0 3.21e-01 79.5% 52.8%
4cu7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 3.99e-01 100.0% 94.2%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 44.0 3.71e-01 90.4% 84.6%
1ocsA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 43.0 3.68e-01 94.5% 78.8%
4nspA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.53 45.0 3.23e-01 100.0% 32.8%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.45e-01 90.4% 51.7%
3fgyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 40.0 3.37e-01 84.9% 53.3%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.21e-01 76.7% 50.8%
7x3hA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 46.0 3.98e-01 98.6% 81.9%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 39.0 3.06e-01 80.8% 38.0%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.21e-01 79.5% 51.0%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.00e-01 74.0% 65.5%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.24e-01 80.8% 57.7%
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 44.0 3.62e-01 95.9% 76.1%
2jr1A01 3.30.160.510 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Histone-like nucleoid-structuring protein H-NS 0.51 35.0 3.70e-01 76.7% 84.4%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.51 44.0 3.63e-01 100.0% 59.6%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 2.98e-01 75.3% 58.5%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 3.84e-01 98.6% 96.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4976249 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.89 64.0 5.39e-01 100.0% 47.8%
3615430 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 52.0 4.68e-01 79.5% 74.0%
4059717 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.68 50.0 4.73e-01 76.7% 100.0%
4368803 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.66 56.0 4.19e-01 100.0% 37.8%
3987365 896.1.1.4 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.66 52.0 5.08e-01 100.0% 78.8%
5031294 2484.1.1.22 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 0.66 59.0 4.38e-01 100.0% 93.5%
3372466 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 56.0 5.61e-01 100.0% 93.3%
3183690 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 47.0 3.69e-01 82.2% 38.0%
3277369 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 4.53e-01 98.6% 64.2%
4580956 2484.1.1.222 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UPF0236 0.63 56.0 3.96e-01 100.0% 33.2%
5032255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.69e-01 78.1% 82.9%
3446982 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.62 43.0 3.49e-01 71.2% 44.4%
4830163 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.61 53.0 4.11e-01 100.0% 66.9%
3593024 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.61 42.0 3.61e-01 71.2% 94.8%
3408176 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 46.0 3.93e-01 80.8% 85.8%
4039156 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.61 54.0 4.75e-01 100.0% 85.5%
3181136 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.61 45.0 3.79e-01 80.8% 60.0%
4319822 2484.1.1.26 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.61 52.0 3.66e-01 100.0% 46.2%
3983036 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.60 47.0 4.90e-01 100.0% 96.9%
5079440 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 54.0 3.97e-01 100.0% 42.6%
3734383 5.1.11.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.60 44.0 2.87e-01 80.8% 44.8%
4003604 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 45.0 4.05e-01 82.2% 60.0%
3259935 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.60 52.0 3.65e-01 100.0% 78.6%
5039143 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.59 51.0 4.43e-01 100.0% 88.3%
3596304 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 42.0 4.18e-01 78.1% 77.5%
4929364 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.59 39.0 4.09e-01 90.4% 76.9%
3958652 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 48.0 3.66e-01 91.8% 48.1%
3958443 2484.1.1.108 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_assoc 0.59 48.0 3.59e-01 91.8% 45.6%
3483821 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.58 38.0 2.54e-01 83.6% 16.9%
4943448 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 48.0 4.16e-01 100.0% 57.5%
3643291 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 42.0 3.64e-01 75.3% 90.0%
4639619 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.58 50.0 4.05e-01 98.6% 88.3%
3986085 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.57 48.0 4.44e-01 98.6% 71.6%
3781935 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 41.0 3.55e-01 78.1% 88.8%
3983782 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.57 48.0 4.51e-01 100.0% 92.6%
3988130 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.57 49.0 4.19e-01 100.0% 80.8%
3541127 2.1.1.170 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SHLD2_OB2 0.55 38.0 3.83e-01 79.5% 70.7%
4932428 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.55 45.0 4.60e-01 97.3% 94.3%
4259031 2484.1.1.219 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF29688 0.55 45.0 3.57e-01 100.0% 63.8%
3973652 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 38.0 3.29e-01 76.7% 52.7%
3483729 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 48.0 4.00e-01 95.9% 90.8%
3694950 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 40.0 3.28e-01 82.2% 51.7%
137821 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.53 39.0 3.56e-01 78.1% 97.0%
3706741 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.53 39.0 2.76e-01 79.5% 41.2%
3473974 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.53 38.0 3.15e-01 78.1% 86.2%
3278537 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.53 38.0 3.29e-01 78.1% 55.2%
5055184 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 38.0 3.67e-01 79.5% 67.1%
1954221 2.26.1.1 beta barrels › OB-fold › Arcadin-1 › Arcadin-1 › Arcadin_1 0.53 38.0 3.82e-01 79.5% 93.3%
3284100 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.52 40.0 3.14e-01 84.9% 60.0%
3863963 220.1.1.2 beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.52 45.0 3.82e-01 98.6% 60.8%
5076453 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.52 36.0 3.16e-01 72.6% 66.1%
3551896 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.52 42.0 4.27e-01 87.7% 95.7%
4131273 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.52 44.0 4.00e-01 98.6% 96.2%
3643907 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.52 44.0 3.43e-01 94.5% 60.6%
4275948 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.51 42.0 3.74e-01 98.6% 60.0%
3718455 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.51 44.0 3.81e-01 94.5% 79.8%
4015718 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.51 37.0 3.95e-01 100.0% 95.0%
3882182 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.51 37.0 3.12e-01 83.6% 43.8%
4278043 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.51 43.0 3.81e-01 100.0% 95.7%
3667340 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.50 38.0 3.31e-01 84.9% 75.2%
4974124 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.50 36.0 3.01e-01 78.1% 53.6%
4355655 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.50 37.0 3.15e-01 79.5% 60.0%