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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00237
Bact-VirBML_coassembly_scaffold_35_prodigal-single.1__X__X__00237
Identity
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-55
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2azeB00 | 6.10.250.540 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 42.0 | 3.38e-01 | 80.0% | 31.7% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 38.0 | 3.07e-01 | 98.2% | 28.6% |
| 3u12A00 | 2.30.29.180 | Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain | 0.67 | 45.0 | 3.70e-01 | 70.9% | 74.0% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.67 | 47.0 | 4.31e-01 | 72.7% | 100.0% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.67 | 45.0 | 2.77e-01 | 70.9% | 11.5% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.66 | 48.0 | 3.96e-01 | 76.4% | 51.0% |
| 1l1dA00 | 2.170.150.20 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. | 0.65 | 45.0 | 3.36e-01 | 72.7% | 31.9% |
| 1npeA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.64 | 45.0 | 2.86e-01 | 72.7% | 40.7% |
| 3lm3A02 | 3.30.1120.110 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.64 | 44.0 | 3.57e-01 | 72.7% | 66.4% |
| 2w0mA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 53.0 | 3.53e-01 | 94.5% | 45.5% |
| 1c5kA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.62 | 46.0 | 2.99e-01 | 81.8% | 65.0% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.61 | 38.0 | 3.24e-01 | 100.0% | 41.7% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 41.0 | 3.45e-01 | 74.5% | 79.4% |
| 3dmgA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 42.0 | 2.87e-01 | 74.5% | 51.0% |
| 4v19S00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.59 | 42.0 | 3.16e-01 | 76.4% | 79.7% |
| 4q28A00 | 3.30.160.780 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 41.0 | 3.30e-01 | 72.7% | 50.0% |
| 4ejoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 44.0 | 3.42e-01 | 80.0% | 77.7% |
| 2cn3A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 42.0 | 2.62e-01 | 76.4% | 30.6% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.58 | 40.0 | 3.27e-01 | 72.7% | 53.4% |
| 1yn8A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.57 | 36.0 | 3.59e-01 | 70.9% | 59.3% |
| 6i8wB01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 47.0 | 2.91e-01 | 90.9% | 71.0% |
| 3r4rA02 | 2.60.40.2590 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 39.0 | 3.06e-01 | 70.9% | 75.2% |
| 7ne4A01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.56 | 45.0 | 2.80e-01 | 89.1% | 89.4% |
| 1k32A01 | 2.120.10.60 | Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain | 0.56 | 39.0 | 2.58e-01 | 76.4% | 25.7% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.56 | 38.0 | 3.00e-01 | 70.9% | 32.2% |
| 3p9aF00 | 1.10.132.80 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.55 | 38.0 | 3.03e-01 | 76.4% | 70.1% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 39.0 | 2.72e-01 | 80.0% | 22.1% |
| 1i1iP02 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.55 | 37.0 | 2.70e-01 | 94.5% | 25.8% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.54 | 38.0 | 3.56e-01 | 78.2% | 100.0% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 36.0 | 3.87e-01 | 70.9% | 93.3% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.54 | 34.0 | 2.64e-01 | 98.2% | 30.0% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 38.0 | 2.43e-01 | 76.4% | 17.7% |
| 1cbiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 40.0 | 3.16e-01 | 90.9% | 39.0% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 41.0 | 3.22e-01 | 89.1% | 85.6% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 40.0 | 3.26e-01 | 87.3% | 94.5% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 39.0 | 3.36e-01 | 92.7% | 61.9% |
| 1j8bA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.51 | 45.0 | 3.84e-01 | 100.0% | 92.4% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 37.0 | 3.41e-01 | 78.2% | 64.9% |
| 3a1jB00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 36.0 | 2.25e-01 | 76.4% | 14.9% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.51 | 36.0 | 3.36e-01 | 78.2% | 64.9% |
| 3b42A00 | 3.30.450.290 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.51 | 42.0 | 3.35e-01 | 100.0% | 53.2% |
| 6w0pA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 39.0 | 2.44e-01 | 98.2% | 28.3% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5051418 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.75 | 37.0 | 2.75e-01 | 80.0% | 20.0% |
| 5001279 | 2004.1.1.308 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 | 0.70 | 50.0 | 3.02e-01 | 74.5% | 13.4% |
| 3673032 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 47.0 | 4.35e-01 | 74.5% | 81.4% |
| 3947909 | 2004.1.1.236 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21,AAA_23 | 0.66 | 46.0 | 2.82e-01 | 74.5% | 12.8% |
| 3750640 | 220.1.1.38 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N | 0.66 | 45.0 | 3.59e-01 | 70.9% | 70.0% |
| 4965137 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.66 | 44.0 | 3.37e-01 | 70.9% | 74.8% |
| 3237008 | 2484.1.1.233 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 | 0.65 | 45.0 | 3.09e-01 | 72.7% | 30.3% |
| 4819839 | 5.1.5.27 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › APEH_N | 0.65 | 45.0 | 3.65e-01 | 74.5% | 62.5% |
| 3957084 | 4019.1.1.1 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.65 | 33.0 | 2.90e-01 | 98.2% | 33.8% |
| 5012108 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 46.0 | 2.88e-01 | 76.4% | 27.5% |
| 3282173 | 2004.1.1.689 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21 | 0.65 | 46.0 | 2.80e-01 | 76.4% | 12.8% |
| 3462961 | 5.1.4.122 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 | 0.64 | 43.0 | 2.80e-01 | 70.9% | 18.8% |
| 3567461 | 260.1.1.1 ↗ | a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › Plectin | 0.64 | 52.0 | 3.30e-01 | 94.5% | 21.3% |
| 1278602 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.64 | 32.0 | 3.12e-01 | 74.5% | 41.7% |
| 3626364 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 50.0 | 4.00e-01 | 100.0% | 42.6% |
| 5064865 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.63 | 52.0 | 3.38e-01 | 92.7% | 46.2% |
| 3974812 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 46.0 | 2.83e-01 | 76.4% | 14.2% |
| 3575893 | 3459.1.1.1 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › FAIM1 | 0.63 | 43.0 | 3.62e-01 | 70.9% | 42.1% |
| 3388135 | 4292.2.1.1 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG | 0.63 | 44.0 | 4.03e-01 | 74.5% | 60.0% |
| 3418892 | 5.1.8.2 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 › DUF295 | 0.63 | 43.0 | 3.45e-01 | 72.7% | 45.2% |
| 4094714 | 4292.2.1.1 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › FlaG | 0.61 | 43.0 | 3.85e-01 | 76.4% | 55.3% |
| 4172303 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.61 | 43.0 | 3.33e-01 | 72.7% | 65.6% |
| 4077788 | 5.1.4.29 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 | 0.61 | 46.0 | 2.98e-01 | 81.8% | 49.4% |
| 4176188 | 5.1.3.20 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 | 0.61 | 45.0 | 2.89e-01 | 81.8% | 44.2% |
| 4257463 | 4292.1.1.1 ↗ | a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG | 0.61 | 43.0 | 3.96e-01 | 76.4% | 62.7% |
| 3537588 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.59 | 41.0 | 2.88e-01 | 72.7% | 62.3% |
| 3998167 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.59 | 40.0 | 2.66e-01 | 70.9% | 16.8% |
| 5028178 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.59 | 44.0 | 2.94e-01 | 96.4% | 21.5% |
| 3892496 | 260.1.1.0 ↗ | a+b duplicates or obligate multimers › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat › beta-hairpin-alpha-hairpin repeat | 0.59 | 48.0 | 4.02e-01 | 92.7% | 63.0% |
| 3784907 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.58 | 41.0 | 3.58e-01 | 74.5% | 74.1% |
| 3784839 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.58 | 39.0 | 3.31e-01 | 70.9% | 45.0% |
| 2576213 | 219.3.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › AnkH, inserted middle domain › AnkH, inserted middle domain | 0.58 | 44.0 | 2.92e-01 | 83.6% | 61.9% |
| 3186255 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.58 | 43.0 | 2.74e-01 | 83.6% | 33.8% |
| 3743864 | 109.4.1.1787 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup188_N-subdom_III | 0.57 | 50.0 | 2.70e-01 | 100.0% | 9.3% |
| 4009799 | 274.1.1.4 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI | 0.57 | 48.0 | 4.03e-01 | 100.0% | 78.1% |
| 4959371 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.56 | 44.0 | 3.35e-01 | 85.5% | 95.2% |
| 4966836 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 38.0 | 3.82e-01 | 70.9% | 80.0% |
| 3258204 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.55 | 39.0 | 2.83e-01 | 76.4% | 40.6% |
| 4999520 | 2008.1.1.44 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FokI_cleav_dom | 0.55 | 38.0 | 2.73e-01 | 70.9% | 57.1% |
| 5023930 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 38.0 | 3.34e-01 | 72.7% | 49.4% |
| 3588565 | 6048.1.1.1 ↗ | a+b two layers › DUF960-like › DUF960-like › DUF960-like › DUF960 | 0.55 | 38.0 | 3.30e-01 | 70.9% | 64.8% |
| 3471048 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 45.0 | 2.65e-01 | 94.5% | 16.5% |
| 3410208 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.55 | 39.0 | 2.88e-01 | 78.2% | 40.0% |
| 4025141 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.55 | 40.0 | 2.79e-01 | 80.0% | 70.0% |
| 3510695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 38.0 | 3.49e-01 | 76.4% | 61.3% |
| 3701944 | 331.17.1.1 ↗ | a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 | 0.54 | 39.0 | 2.81e-01 | 78.2% | 37.7% |
| 3693820 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.53 | 41.0 | 2.97e-01 | 83.6% | 30.5% |
| 3435911 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 39.0 | 3.21e-01 | 78.2% | 46.4% |
| 182717 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.53 | 42.0 | 2.73e-01 | 94.5% | 50.2% |
| 3184613 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 37.0 | 2.79e-01 | 78.2% | 25.6% |
| 4498285 | 245.2.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd | 0.52 | 42.0 | 3.43e-01 | 85.5% | 49.5% |
| 5023931 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 39.0 | 3.68e-01 | 89.1% | 74.3% |
| 5040798 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.51 | 37.0 | 3.21e-01 | 83.6% | 87.9% |