←Back to structures

BML_coassembly_scaffold_35_prodigal-single.1__X__X__00272

Bact-Vir

BML_coassembly_scaffold_35_prodigal-single.1__X__X__00272

Identity

Kingdom:
phage

Quality

70.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-75
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e7zA01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.60 36.0 3.93e-01 80.3% 73.7%
4n04A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 36.0 3.13e-01 94.4% 38.7%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.59 44.0 3.39e-01 81.7% 43.9%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.58 38.0 3.61e-01 83.1% 54.7%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 37.0 3.05e-01 85.9% 36.4%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 36.0 3.63e-01 77.5% 66.7%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.43e-01 80.3% 54.7%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.54 40.0 3.30e-01 83.1% 64.0%
3egyX00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.54 45.0 3.24e-01 95.8% 56.0%
1li5B01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 42.0 2.94e-01 90.1% 27.7%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 47.0 2.94e-01 98.6% 21.4%
3itwA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 32.0 3.48e-01 90.1% 76.8%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 36.0 3.22e-01 74.6% 51.8%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.28e-01 71.8% 57.1%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.51 39.0 3.76e-01 100.0% 73.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890599 1.1.7.80 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.63 39.0 4.07e-01 78.9% 66.7%
4043462 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.63 48.0 4.07e-01 83.1% 60.8%
4996190 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.62 48.0 3.98e-01 83.1% 62.4%
4959043 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 47.0 3.86e-01 83.1% 56.9%
5082761 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.61 46.0 3.81e-01 81.7% 57.7%
5028306 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.59 45.0 3.43e-01 83.1% 41.1%
4056113 1.1.7.80 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.59 40.0 3.67e-01 97.2% 51.0%
3599060 101.1.8.0 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.57 43.0 3.21e-01 83.1% 44.5%
3511564 1.1.7.80 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.57 39.0 3.60e-01 97.2% 52.0%
3890381 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 35.0 3.42e-01 90.1% 55.0%
3996624 5.1.5.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.57 40.0 2.53e-01 74.6% 21.9%
4630692 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.57 45.0 3.63e-01 93.0% 65.6%
3971861 1.1.7.80 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.57 39.0 3.51e-01 97.2% 49.5%
3788312 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 39.0 2.32e-01 73.2% 14.5%
4944386 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 42.0 3.70e-01 81.7% 89.1%
3323896 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 40.0 2.59e-01 77.5% 24.4%
4141551 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.55 45.0 2.66e-01 91.5% 11.9%
3514959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.55 41.0 3.08e-01 81.7% 81.0%
3516559 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 41.0 3.12e-01 88.7% 33.3%
4972215 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 38.0 2.72e-01 73.2% 30.0%
4349950 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 34.0 3.68e-01 76.1% 75.0%
3471746 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.53 46.0 3.59e-01 98.6% 66.9%
5016556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.50e-01 76.1% 73.3%
3639262 2003.1.2.103 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Prenylcys_lyase, NAD_binding_8 0.52 42.0 2.65e-01 91.5% 92.6%
4119875 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 34.0 3.59e-01 80.3% 72.3%
5078501 3016.1.1.2 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.51 38.0 3.48e-01 80.3% 60.0%
3707023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 42.0 3.83e-01 93.0% 97.0%
3194165 2003.1.5.99 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › SRR1 0.51 40.0 2.61e-01 87.3% 33.9%
3659855 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 34.0 3.28e-01 88.7% 61.3%
4954420 2003.1.5.49 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_30 0.51 37.0 2.45e-01 80.3% 38.3%
3987739 207.4.1.6 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CFSR 0.50 36.0 2.47e-01 77.5% 22.1%
3510708 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.50 35.0 3.63e-01 73.2% 97.1%
5028816 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.50 40.0 2.42e-01 91.5% 12.8%
3214162 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 34.0 3.59e-01 70.4% 88.3%
D2 high residues 612-645_679-780
PDB
Domain cluster: representative
D3 medium residues 122-136_392-498
PDB
Domain cluster: representative
D4 medium residues 792-888
PDB