←Back to structures
BML_coassembly_scaffold_35_prodigal-single.1__X__X__00397
Bact-VirBML_coassembly_scaffold_35_prodigal-single.1__X__X__00397
Identity
- Kingdom:
- phage
Quality
94.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 38-106
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 43.0 | 3.53e-01 | 100.0% | 30.8% |
| 1yo7A00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.72 | 62.0 | 5.28e-01 | 100.0% | 81.7% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.69 | 60.0 | 5.36e-01 | 100.0% | 93.1% |
| 3zdrA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.67 | 56.0 | 4.07e-01 | 97.1% | 73.8% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.67 | 42.0 | 3.71e-01 | 100.0% | 44.4% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.66 | 51.0 | 4.60e-01 | 84.1% | 86.6% |
| 1vfiA00 | 1.10.246.100 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 | 0.66 | 42.0 | 3.76e-01 | 87.0% | 47.4% |
| 4gr6B00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.66 | 56.0 | 4.83e-01 | 98.6% | 61.0% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.65 | 47.0 | 4.42e-01 | 76.8% | 79.1% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.64 | 47.0 | 4.90e-01 | 91.3% | 91.8% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 54.0 | 4.71e-01 | 100.0% | 69.6% |
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 49.0 | 4.58e-01 | 97.1% | 70.2% |
| 3bhgA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.61 | 49.0 | 4.19e-01 | 89.9% | 75.7% |
| 2ld7B00 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.60 | 46.0 | 4.58e-01 | 88.4% | 86.7% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.59 | 41.0 | 3.46e-01 | 100.0% | 45.0% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.58 | 51.0 | 4.75e-01 | 98.6% | 96.5% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 42.0 | 3.73e-01 | 78.3% | 95.1% |
| 3qwlA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.57 | 44.0 | 3.59e-01 | 85.5% | 75.7% |
| 6lumD01 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.56 | 42.0 | 3.47e-01 | 79.7% | 92.0% |
| 2kkmA01 | 1.20.1440.170 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like | 0.54 | 37.0 | 3.13e-01 | 72.5% | 95.2% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 39.0 | 3.91e-01 | 82.6% | 77.0% |
| 3zheB02 | 1.20.190.60 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › | 0.52 | 46.0 | 3.41e-01 | 100.0% | 39.8% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.52 | 44.0 | 3.13e-01 | 100.0% | 42.3% |
| 1kt1A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 40.0 | 3.08e-01 | 84.1% | 41.1% |
| 2kp7A01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.52 | 41.0 | 4.05e-01 | 91.3% | 89.2% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 39.0 | 3.43e-01 | 100.0% | 55.9% |
| 4rg9B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 42.0 | 3.14e-01 | 89.9% | 37.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.73 | 44.0 | 4.33e-01 | 100.0% | 56.0% | |
| 4267135 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.73 | 60.0 | 5.70e-01 | 94.2% | 91.8% |
| 3613860 | 601.1.2.105 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Transmemb_17 | 0.72 | 61.0 | 5.00e-01 | 100.0% | 77.1% |
| 3188597 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.69 | 46.0 | 4.19e-01 | 100.0% | 53.3% |
| 3589212 | 633.2.1.1 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun | 0.69 | 59.0 | 5.82e-01 | 100.0% | 100.0% |
| 3806998 | 601.1.1.97 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DNA_repr_REX1B | 0.67 | 49.0 | 3.83e-01 | 78.3% | 68.0% |
| 5037929 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.64 | 53.0 | 4.47e-01 | 94.2% | 53.3% |
| 3495945 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.63 | 45.0 | 3.90e-01 | 78.3% | 60.9% |
| 4937180 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.63 | 53.0 | 4.32e-01 | 94.2% | 52.3% |
| 3271988 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.62 | 49.0 | 4.83e-01 | 89.9% | 79.5% |
| 5009373 | 5060.2.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF | 0.62 | 52.0 | 4.37e-01 | 94.2% | 56.7% |
| 4927987 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.59 | 47.0 | 3.16e-01 | 91.3% | 25.0% |
| 3779360 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.59 | 49.0 | 3.88e-01 | 97.1% | 78.1% |
| 3498448 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.59 | 40.0 | 3.85e-01 | 100.0% | 61.3% |
| 3518787 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.59 | 47.0 | 4.83e-01 | 94.2% | 100.0% |
| 3737312 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.59 | 47.0 | 4.63e-01 | 92.8% | 82.7% |
| 5055340 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.59 | 46.0 | 3.83e-01 | 98.6% | 46.9% |
| 3729025 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 43.0 | 3.35e-01 | 79.7% | 39.3% |
| 3818805 | 509.1.1.1 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH | 0.57 | 44.0 | 4.52e-01 | 88.4% | 96.9% |
| 4962832 | 5060.2.1.0 ↗ | alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain | 0.57 | 46.0 | 4.01e-01 | 95.7% | 55.0% |
| 4954669 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.55 | 43.0 | 4.26e-01 | 88.4% | 81.3% |
| 3228129 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.55 | 38.0 | 3.12e-01 | 100.0% | 38.5% |
| 3563120 | 3914.1.1.4 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMC | 0.55 | 48.0 | 2.91e-01 | 100.0% | 14.5% |
| 3235045 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.53 | 44.0 | 3.48e-01 | 97.1% | 86.9% |
| 4999419 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.53 | 43.0 | 2.92e-01 | 92.8% | 36.8% |
| 3193435 | 3755.3.1.451 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › BUD22 | 0.52 | 43.0 | 3.64e-01 | 100.0% | 96.3% |
| 3976215 | 105.2.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C | 0.51 | 38.0 | 2.94e-01 | 100.0% | 35.5% |
| 3504306 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 47.0 | 3.98e-01 | 100.0% | 65.7% |
| 4226239 | 3455.1.1.0 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors | 0.50 | 34.0 | 3.38e-01 | 97.1% | 66.7% |