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BML_coassembly_scaffold_35_prodigal-single.1__X__X__00418

Bact-Vir

BML_coassembly_scaffold_35_prodigal-single.1__X__X__00418

Identity

Kingdom:
phage

Quality

89.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-64
PDB
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.76 61.0 5.79e-01 100.0% 73.7%
2zw2A00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.75 67.0 6.07e-01 100.0% 97.6%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.75 65.0 6.02e-01 100.0% 74.7%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.74 50.0 5.48e-01 98.4% 90.0%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.74 58.0 5.73e-01 100.0% 80.6%
2cuwA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.74 64.0 5.91e-01 100.0% 97.6%
1vq3B00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.71 60.0 5.54e-01 98.4% 96.4%
1gtdA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.68 57.0 5.35e-01 98.4% 98.8%
5e1qA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 47.0 4.13e-01 98.4% 51.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 50.0 4.21e-01 100.0% 48.6%
1t4aA00 3.30.1280.10 Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS 0.65 55.0 5.13e-01 96.8% 100.0%
3s2cJ01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 49.0 3.80e-01 100.0% 37.1%
2d73A03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 48.0 3.96e-01 100.0% 46.0%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.63 55.0 4.36e-01 100.0% 66.7%
1mwqA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.63 55.0 4.74e-01 100.0% 93.0%
3gqcC04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 53.0 4.40e-01 100.0% 59.2%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 49.0 4.18e-01 100.0% 61.5%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.59 44.0 2.66e-01 100.0% 12.0%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 51.0 4.51e-01 100.0% 98.9%
2rc5B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 3.90e-01 100.0% 58.6%
1r6yA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 51.0 4.35e-01 98.4% 98.1%
2ca9A02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 50.0 4.54e-01 100.0% 91.0%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 52.0 4.82e-01 100.0% 97.5%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 50.0 4.70e-01 100.0% 96.2%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.57 48.0 4.29e-01 96.8% 90.4%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.57 51.0 4.43e-01 100.0% 92.9%
3fmbA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 50.0 4.32e-01 100.0% 99.0%
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 51.0 4.82e-01 100.0% 100.0%
3b49A00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.57 46.0 3.23e-01 88.9% 52.0%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 51.0 4.75e-01 100.0% 100.0%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 52.0 4.56e-01 100.0% 87.8%
1x0pA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 49.0 4.35e-01 100.0% 84.4%
3gz7B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 49.0 4.31e-01 100.0% 95.9%
8cwoF01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.57 50.0 4.42e-01 98.4% 100.0%
2cfxA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.56 48.0 4.36e-01 100.0% 85.6%
4lbhA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.56 49.0 4.33e-01 100.0% 95.7%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.55 49.0 4.61e-01 100.0% 90.8%
1x7vA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 49.0 4.23e-01 100.0% 94.9%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.55 48.0 3.55e-01 100.0% 46.5%
2pmvA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.55 46.0 3.99e-01 100.0% 88.9%
5b08A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 46.0 4.04e-01 98.4% 97.0%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.55 49.0 4.26e-01 100.0% 98.9%
1yrxC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 46.0 4.03e-01 100.0% 78.8%
3jb4C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.16e-01 100.0% 45.2%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 47.0 4.12e-01 100.0% 92.8%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.54 47.0 3.83e-01 100.0% 57.4%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 48.0 4.42e-01 100.0% 97.5%
2dmkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.59e-01 100.0% 53.4%
2pgcC01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 47.0 4.08e-01 100.0% 99.0%
3w9iA06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.53 43.0 3.77e-01 93.7% 97.1%
1tr0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 45.0 3.90e-01 100.0% 99.1%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.52 45.0 4.13e-01 100.0% 97.7%
1b33N01 3.30.1490.170 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) 0.52 40.0 4.15e-01 98.4% 100.0%
5k9fA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 43.0 3.79e-01 98.4% 94.2%
6k2lA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 43.0 3.72e-01 100.0% 67.6%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.51 45.0 3.53e-01 100.0% 48.1%
3bguA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 41.0 3.71e-01 96.8% 100.0%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 43.0 3.80e-01 100.0% 98.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5013194 3115.4.1.0 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.88 71.0 7.60e-01 96.8% 100.0%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.84 67.0 7.15e-01 100.0% 98.2%
3987406 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.81 71.0 6.66e-01 96.8% 78.7%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.81 68.0 6.80e-01 100.0% 89.2%
2106284 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.78 68.0 6.68e-01 100.0% 88.1%
3508212 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.76 63.0 6.12e-01 100.0% 82.9%
1442666 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.75 65.0 5.96e-01 100.0% 72.8%
4008166 3115.1.1.10 a+b two layers › GP2-like › RplX-like › RplX-like › PF27430 0.75 65.0 5.64e-01 100.0% 63.2%
4673268 3115.1.1.8 a+b two layers › GP2-like › RplX-like › RplX-like › Usg 0.74 62.0 6.36e-01 100.0% 95.0%
4941949 304.100.1.1 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS 0.74 63.0 5.86e-01 96.8% 100.0%
4947546 304.100.1.0 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like 0.74 66.0 5.96e-01 100.0% 98.8%
4128974 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.73 63.0 5.82e-01 100.0% 75.0%
2741079 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.73 63.0 6.03e-01 100.0% 83.1%
3280008 3115.1.1.2 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 0.73 65.0 5.80e-01 100.0% 80.0%
3281849 303.1.1.3 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › DUF4189 0.73 54.0 4.49e-01 100.0% 45.1%
5000608 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.68 56.0 4.27e-01 100.0% 38.9%
3678389 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.66 47.0 3.39e-01 100.0% 26.7%
3247277 5069.1.3.99 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › NRF 0.65 55.0 4.09e-01 98.4% 37.5%
3599867 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.64 56.0 4.57e-01 100.0% 56.7%
3394713 3115.1.1.3 a+b two layers › GP2-like › RplX-like › RplX-like › NRF 0.64 55.0 4.16e-01 100.0% 43.1%
3603592 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.64 55.0 3.53e-01 100.0% 26.7%
4199319 377.4.1.2 few secondary structure elements › Glucocorticoid receptor-like › YlxR-like › YlxR-like › RRG8 0.63 41.0 4.16e-01 100.0% 66.2%
184563 12.1.1.22 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GH97_C 0.63 48.0 3.93e-01 100.0% 44.8%
3590783 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 54.0 4.21e-01 100.0% 45.5%
5061356 2003.1.2.300 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.63 54.0 3.39e-01 100.0% 22.5%
4953396 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.62 51.0 3.97e-01 100.0% 40.0%
4669788 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.62 49.0 3.87e-01 100.0% 41.5%
3089702 807.1.1.1 a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD 0.62 50.0 4.41e-01 100.0% 59.6%
3723317 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 47.0 3.60e-01 100.0% 37.0%
4978850 304.134.1.0 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like 0.61 52.0 4.65e-01 96.8% 100.0%
3287138 303.1.1.1 a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.61 52.0 4.01e-01 100.0% 42.6%
4985428 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.60 50.0 4.77e-01 100.0% 79.5%
3633743 2004.1.1.36 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N 0.59 46.0 2.99e-01 90.5% 74.9%
5042199 2003.1.2.300 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.58 50.0 3.15e-01 100.0% 21.4%
4019120 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 45.0 2.64e-01 92.1% 38.0%
3785573 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 44.0 3.57e-01 100.0% 44.2%
3488063 3333.1.1.0 a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 0.55 47.0 3.66e-01 100.0% 49.3%
4979481 304.110.1.0 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.55 48.0 4.30e-01 98.4% 83.3%
3889090 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 47.0 3.80e-01 100.0% 53.8%
1697855 10.2.1.1 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.54 45.0 3.16e-01 100.0% 45.2%
3633662 12.3.1.2 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.53 40.0 2.70e-01 100.0% 19.6%
3992476 1116.1.1.2 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD 0.53 47.0 3.61e-01 100.0% 53.1%
3492718 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 45.0 3.95e-01 100.0% 62.0%
5041889 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.52 41.0 3.02e-01 92.1% 87.5%
3574350 210.2.1.0 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.51 43.0 3.01e-01 100.0% 29.4%
4944727 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.28e-01 100.0% 42.9%
3785861 5.1.2.20 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BMT 0.50 43.0 2.57e-01 98.4% 80.2%